PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024965733.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 423aa MW: 49393 Da PI: 9.1668

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024965733.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.8	6.3e-28	80	165	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++m+ ++++++ k+plW evs+ m +e+g++r++k+C+ek+enl k+yk++keg+ +r ++ +++++f+qlea XP_024965733.1 80 RWPRQETLTLLEVRSRMNCKFKEANHKGPLWNEVSRIMsEEHGYQRNAKKCREKFENLYKYYKRTKEGKAGR--QDGKHYRFFSQLEA 165 8***********************************999*************************98..55667*****85 PP
2	trihelix	38.4	3.2e-12	311	384	1	72
trihelix 1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 +W ++e+++Li +rr ++ + g+ ++ lW+e+++km++ g++r+ Ck kw+++n ++ k+++++ + XP_024965733.1 311 KWGENEIRQLIHFRRTNIDAGIEqvGNMEGILWDEIASKMASLGYNRNKSICKTKWDSINELEERSKRRKESTR 384 7***********97766665535899****************************9998777777766643 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MEEQYGIANL AHYMNISPIF TAITQPPCGP HHDLHYEMVV VGSGGGGRTI PPGPGSRIGG 60 LSVGDGGLEM GIGGGDVNGR WPRQETLTLL EVRSRMNCKF KEANHKGPLW NEVSRIMSEE 120 HGYQRNAKKC REKFENLYKY YKRTKEGKAG RQDGKHYRFF SQLEALYGER GRTTCPNPNC 180 KHAMGSFTEN TDCVGRKMKT RKLRKRSWKN IEDFIDAQTR KIMDKQEAWM EKMMKTIEQK 240 EQERMSRVEQ WRKEDVGRLE IKHKFWGKRR AWMESREPLL MQALHKLTEK KSLQNHCFPE 300 CNDYINNPMC KWGENEIRQL IHFRRTNIDA GIEQVGNMEG ILWDEIASKM ASLGYNRNKS 360 ICKTKWDSIN ELEERSKRRK ESTRSTNFQY QEGTFQEHER PVEPSDHQND GCYRLLMGDQ 420 EDV

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MEEQYGIANL AHYMNISPIF TAITQPPCGP HHDLHYEMVV VGSGGGGRTI PPGPGSRIGG  60
LSVGDGGLEM GIGGGDVNGR WPRQETLTLL EVRSRMNCKF KEANHKGPLW NEVSRIMSEE  120
HGYQRNAKKC REKFENLYKY YKRTKEGKAG RQDGKHYRFF SQLEALYGER GRTTCPNPNC  180
KHAMGSFTEN TDCVGRKMKT RKLRKRSWKN IEDFIDAQTR KIMDKQEAWM EKMMKTIEQK  240
EQERMSRVEQ WRKEDVGRLE IKHKFWGKRR AWMESREPLL MQALHKLTEK KSLQNHCFPE  300
CNDYINNPMC KWGENEIRQL IHFRRTNIDA GIEQVGNMEG ILWDEIASKM ASLGYNRNKS  360
ICKTKWDSIN ELEERSKRRK ESTRSTNFQY QEGTFQEHER PVEPSDHQND GCYRLLMGDQ  420
EDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-83	Trihelix family protein