PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024965705.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 390aa MW: 40953.4 Da PI: 6.8

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024965705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.1e-12	213	258	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_024965705.1 213 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 258 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MRNKNPHVTT EVQMRKTQES QMSLQDDTNS FDPTVTHDDF LDQMLSGLQT TVSWPDISAG 60 NGGGGQNKSP LLPWDVDHFD DQSAFLSSKL RQHQISAAAG GRTPSSALKS LQLSRGAGES 120 GLFGNDNIDD SSFKSPIGDN TSIQNLFHGF TGSLTSNQTQ QFRNPPAQNF GSPGTATAVM 180 NQVQTSAGGG GGGVPSQPRQ RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK 240 TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GAAAGAIAPV VAEGSGVGRS SNGTASSSNN 300 DTMTVTENQV VKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCNPSS ASRSNLPSLG 360 GGGEGGGPSS PNMSVLTVQS ANGVSVKDSP

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MRNKNPHVTT EVQMRKTQES QMSLQDDTNS FDPTVTHDDF LDQMLSGLQT TVSWPDISAG  60
NGGGGQNKSP LLPWDVDHFD DQSAFLSSKL RQHQISAAAG GRTPSSALKS LQLSRGAGES  120
GLFGNDNIDD SSFKSPIGDN TSIQNLFHGF TGSLTSNQTQ QFRNPPAQNF GSPGTATAVM  180
NQVQTSAGGG GGGVPSQPRQ RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK  240
TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GAAAGAIAPV VAEGSGVGRS SNGTASSSNN  300
DTMTVTENQV VKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCNPSS ASRSNLPSLG  360
GGGEGGGPSS PNMSVLTVQS ANGVSVKDSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	223	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-64	bHLH family protein