PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024965686.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 247aa MW: 28478.1 Da PI: 8.5744 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 106 | 160 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t++q++ Le+ F+ ++++++ +++eLAkkl+L rq+ vWFqNrRa+ k XP_024965686.1 106 RKKLKLTTDQTTLLEDSFKLHSTLNTGQKQELAKKLNLLPRQIEVWFQNRRARTK 160 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 111.9 | 4.2e-36 | 106 | 193 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk++l+++q +lLE+sF+ +++L++ +K+ela++L+l prq++vWFqnrRARtk+kq+E+++e Lk+++++l +en+rL+ke ee r XP_024965686.1 106 RKKLKLTTDQTTLLEDSFKLHSTLNTGQKQELAKKLNLLPRQIEVWFQNRRARTKLKQIEQECELLKKCCETLGDENRRLKKELEEAR 193 69*********************************************************************************98866 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MSEEERCNTT LGLGLGLGIG IGVGIKREKQ FKQNKRGFWL DLSLPIRPVK IEPRDHHHQQ 60 HQHEKDDQDS FSSKTTDDQE EDETRMKTSD CSNVDGYINN NNDGSRKKLK LTTDQTTLLE 120 DSFKLHSTLN TGQKQELAKK LNLLPRQIEV WFQNRRARTK LKQIEQECEL LKKCCETLGD 180 ENRRLKKELE EARSCCSLKF DHRHQPPLPL YIQYPSTAAM RHPCDKKGKS DEDTKRVAVV 240 NGGKQAP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 163 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-25 | HD-ZIP family protein |