PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024965625.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family FAR1
Protein Properties Length: 307aa    MW: 36085.3 Da    PI: 9.5049
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024965625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1552.6e-1735130190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                     k+Y++YA+evGF+vr s++k + + g+it++ +vCskeg++ ++  +      ++ + r+++ +  gC  ++k++  k + ++ev+k++++HnH 
  XP_024965625.1  35 KMYRKYANEVGFDVRLSNKKIN-KIGRITSQFYVCSKEGRPPSKYFDsldvlpNDCRIRNSNIKCSGCGTCFKIHFVKeRRQYEVYKFVEQHNHM 128
                     68***************98887.6667**************999988999*988888899999999*********99989**************9 PP

            FAR1  89 la 90 
                     l+
  XP_024965625.1 129 LF 130
                     97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MGEMNDGSKC WFPNVDIKYK PKVGDGFESV ESAEKMYRKY ANEVGFDVRL SNKKINKIGR  60
ITSQFYVCSK EGRPPSKYFD SLDVLPNDCR IRNSNIKCSG CGTCFKIHFV KERRQYEVYK  120
FVEQHNHMLF NKEGMSSKVG VTKSHRFRKS LKGGVDLSGG TVRDHQNFKR DMAYFVGNKD  180
AQMLLKHALI FVPFVAIDNH KKFFVVGAAL IQNESVVDYT WISNYLQYRM SFVTEFNKLV  240
WNVHLGLDEF EMQWNNMMDL YRLRGDPWFD ELYEIRESWI SAYYKDYQMS GLKKTTSRSE  300
NINVFLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.11e-13FAR1 family protein