PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024965513.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | ARF | ||||||||
Protein Properties | Length: 673aa MW: 75498.2 Da PI: 5.965 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.2 | 1.3e-22 | 127 | 227 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ +++ ++l+ d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F + + XP_024965513.1 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--RGE 217 99****************************964333..4459************************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_024965513.1 218 NGELRVGVRR 227 999*****97 PP | |||||||
2 | Auxin_resp | 109.9 | 2.5e-36 | 253 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+s+seF+v+++k+++a ++k+ vGmRfkm+fe+e+++err+sGt+vgv d+ +++W +S+WrsLk XP_024965513.1 253 ASHAIATGTLFSVFYKPRTSRSEFIVSLNKYLEARNHKLLVGMRFKMRFEGEEVPERRFSGTIVGVGDTASSKWLDSEWRSLK 335 789******************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence |
MGHIAGTHYP GGPQSGSLGD AIYKELWHAC AGPLVNVPRE GERVYYFPQG HMEQLEASMH 60 QGLDQQLPSF DLPAKILCKV VNIQLRAEPE TDEVYAQITL LPDPDQNEVT IPDPPPTEPP 120 SCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAS DLHGNEWHFR 180 HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR LLNNMPSSVI 240 SSHSMHLGVL ATASHAIATG TLFSVFYKPR TSRSEFIVSL NKYLEARNHK LLVGMRFKMR 300 FEGEEVPERR FSGTIVGVGD TASSKWLDSE WRSLKVQWDE LSSILRPDRV SPWELEPLVA 360 SNSTNSPPLQ RNKRARSVLP NSVPDISGLG MWKSPGDRPS AFQYCDPQRG RDIYPSNNIS 420 SITGISLSYS ENGSLPPAST TSMHWSNLRE AITESFEPLA SKESGEKRQS NGYRLFGIEL 480 LEHPNVDETS PMVVSRTVAE ERPLCPVDTE SDWGSEPSNV NRSDIPSASC EPEKCSMRSQ 540 EFHTRQIRSC TKVHMQGIAV GRAVDLTQLN CYEDLLRKLE NMFEIEGELH VVPKKWQVVY 600 TDCEDDIMMV GDDPWHEFCS MVRKIFIYTT EEAKRLSPKI KLPENDELIQ GKLVLNAQVS 660 TEEQSSSNEG FGC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.2 | 0.0 | ARF family protein |