PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024965434.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 638aa MW: 73123.9 Da PI: 9.6154

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024965434.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.1	5.2e-17	35	130	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ++Y++YA vGF++r +++k ++ g + +r fvCskeg + +++ + e++r +++ + tgCka+lkv+ k ++++ev+++ + nH XP_024965434.1 35 NMYRKYADVVGFDIRLASKKMNSLGG-VQTRYFVCSKEGIPPKKEFDslevssGERRRCNTNFKCTGCKACLKVHYVKeSDRYEVYHFIEARNHM 128 58*************999886655.99********99998899999778888899999********999************** PP FAR1 89 la 90 l+ XP_024965434.1 129 LC 130 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence
MGESPGGTKL WIPKVDGNIC PTVGEFFSSV DSIENMYRKY ADVVGFDIRL ASKKMNSLGG 60 VQTRYFVCSK EGIPPKKEFD SLEVSSGERR RCNTNFKCTG CKACLKVHYV KESDRYEVYH 120 FIEARNHMLC RSDEKLFTRS RHQLDYKDRK NVYHASSSKV GITQSCRMQL AINGGLVSSG 180 GTARDHMNFR RDIMLFVGNK DAQMLINKMN KRREHCPHAM IFVPFVAIDN HKKSIVVGAS 240 LIRNESIVNF TWVLKAFMKA HGSQPQFVIT DQCVVMKQAI PIVFPEATHR LCMWHITKKV 300 KEKIYDHLAH GTSFKSKFNK LIWNVHISAE IFEEKWNALM DEFGLRGHSW FEKIQRKEHC 360 SLEVATRTTI PTLLSPSKIE AQAAKVYTKT MFFEVQKEMN KAVWFCRVVE VVEVGDKMIY 420 NITDKNKNSE VVHDVRGDSF DCNCNHFVRN GILCRHAFKV MLNSEVQSIP EKYILPRWRR 480 ELVPVELLLA RVRYGEMDVE KQALINQATS MFDLIIGHVR NDKGALTEFV ERLERLGDEI 540 SLDIPILTGT KQKRNDIQEL LCVSEPESVD VLPPTWIHNK GCGTRKRLVG MSERISMNAR 600 SRKDCAELVI KWGGMIPATV RRRAIVPNNG LGVRIIIV

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence

MGESPGGTKL WIPKVDGNIC PTVGEFFSSV DSIENMYRKY ADVVGFDIRL ASKKMNSLGG  60
VQTRYFVCSK EGIPPKKEFD SLEVSSGERR RCNTNFKCTG CKACLKVHYV KESDRYEVYH  120
FIEARNHMLC RSDEKLFTRS RHQLDYKDRK NVYHASSSKV GITQSCRMQL AINGGLVSSG  180
GTARDHMNFR RDIMLFVGNK DAQMLINKMN KRREHCPHAM IFVPFVAIDN HKKSIVVGAS  240
LIRNESIVNF TWVLKAFMKA HGSQPQFVIT DQCVVMKQAI PIVFPEATHR LCMWHITKKV  300
KEKIYDHLAH GTSFKSKFNK LIWNVHISAE IFEEKWNALM DEFGLRGHSW FEKIQRKEHC  360
SLEVATRTTI PTLLSPSKIE AQAAKVYTKT MFFEVQKEMN KAVWFCRVVE VVEVGDKMIY  420
NITDKNKNSE VVHDVRGDSF DCNCNHFVRN GILCRHAFKV MLNSEVQSIP EKYILPRWRR  480
ELVPVELLLA RVRYGEMDVE KQALINQATS MFDLIIGHVR NDKGALTEFV ERLERLGDEI  540
SLDIPILTGT KQKRNDIQEL LCVSEPESVD VLPPTWIHNK GCGTRKRLVG MSERISMNAR  600
SRKDCAELVI KWGGMIPATV RRRAIVPNNG LGVRIIIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-39	FAR1 family protein