PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024965127.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

DBB

Protein Properties

Length: 196aa MW: 21828.5 Da PI: 5.6426

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024965127.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.1	1.3e-06	5	44	6	39
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ + e + +C++++ +lC +C + H+ H++ XP_024965127.1 5 CDYCREARSMVYCRSDEAYLCLSCDRNVHSAnalskrHSR 44 *****************************65677777765 PP
2	zf-B_box	27.5	6.5e-09	46	89	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 +C++++++++ C d + lC++C e+H+ H+++ XP_024965127.1 46 LVCDRCNSQPAVVRCVDEKLSLCQNCDWEGHNVsnsaisrHSRQ 89 68*****************************4366777777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MGYSCDYCRE ARSMVYCRSD EAYLCLSCDR NVHSANALSK RHSRTLVCDR CNSQPAVVRC 60 VDEKLSLCQN CDWEGHNVSN SAISRHSRQT LNCYSGCPSA VELSSIWSFM SDSPSVIDST 120 CEQGIGLMSI ADKDRDLSVE DMREGLKSNV WMSSSLVQSG NRPMNVVQQA DPKDCSTSKV 180 NLSWVFSVSA VYEFNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-64	CO-like family protein