PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964573.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 431aa MW: 49694.6 Da PI: 7.43

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.9	3.2e-08	146	196	47	90
FAR1 47 k......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + +++ r+++++r gC a++k++ k + ++ev+k+ ++HnH l+ XP_024964573.1 146 DsldvlpCDRRIRNSNVKRSGCGACFKIHFVKeRRQYEVYKFIEQHNHMLF 196 356666566788999************99989************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MDYMPFNEIF SKDIVEESSV FDSMNDCQGL DYGGENATAV NNETIEDQAN YSMRNEDGCN 60 DKKETVSEHN DGVFVDFVDI DVASLSNEAE DXXSDGMGET NDGSKCWFPN VDVEYKPKVG 120 DGFETVESAE KMYRNKEGRP PSKYFDSLDV LPCDRRIRNS NVKRSGCGAC FKIHFVKERR 180 QYEVYKFIEQ HNHMLFNKEE MRFSRSKRQL HYADHKTVFH GSSLKVGVTK SHRFRKAITG 240 GVDCSGGTVR DHQNFKRDMA YFVGNKDAQM LLNVMSNRRK ELLAIFWVDE TARSNYREFG 300 DTISFDATFR TNKHAMIFVP FVAIDNHKKS VVVGAALIHN ESVVDYTWVL KDFVKAHGRQ 360 PRFVITDQCA SMKQAILIAF PKSKHRLCMW HITKKLKSKI SNNLQHRTPF VSEFNKLVWN 420 VHLGPDEFEM K

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MDYMPFNEIF SKDIVEESSV FDSMNDCQGL DYGGENATAV NNETIEDQAN YSMRNEDGCN  60
DKKETVSEHN DGVFVDFVDI DVASLSNEAE DXXSDGMGET NDGSKCWFPN VDVEYKPKVG  120
DGFETVESAE KMYRNKEGRP PSKYFDSLDV LPCDRRIRNS NVKRSGCGAC FKIHFVKERR  180
QYEVYKFIEQ HNHMLFNKEE MRFSRSKRQL HYADHKTVFH GSSLKVGVTK SHRFRKAITG  240
GVDCSGGTVR DHQNFKRDMA YFVGNKDAQM LLNVMSNRRK ELLAIFWVDE TARSNYREFG  300
DTISFDATFR TNKHAMIFVP FVAIDNHKKS VVVGAALIHN ESVVDYTWVL KDFVKAHGRQ  360
PRFVITDQCA SMKQAILIAF PKSKHRLCMW HITKKLKSKI SNNLQHRTPF VSEFNKLVWN  420
VHLGPDEFEM K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-34	FAR1 family protein