PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964557.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 747aa MW: 86951 Da PI: 8.6959

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964557.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.5	8.2e-22	99	194	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y +YA ++GF+vr++ +k++ ++gei +r+fvCs+eg++++++ + e++ r+++ +r+gC+a++k++++k ++ +e++++++ HnH+ XP_024964557.1 99 KMYMAYADNAGFDVRMHVKKTN-KHGEIQTRWFVCSREGNPKKKEFDslymqpGERRYRNTNIKRCGCNACIKIHLTKdRACYEIYEFVEAHNHA 192 68***********9887776.8888************999999988899999***************98999*********** PP FAR1 89 la 90 l+ XP_024964557.1 193 LF 194 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence
VNVNDKLNSG YEYGRNTIPD DEEDDQSVPI DSIIVIPTLI PQSNFFFPSD LDSITSSQQE 60 VDNDIEESSE GIQFFIPKVD DALKPNMKSQ YATINEVEKM YMAYADNAGF DVRMHVKKTN 120 KHGEIQTRWF VCSREGNPKK KEFDSLYMQP GERRYRNTNI KRCGCNACIK IHLTKDRACY 180 EIYEFVEAHN HALFNINDRR FSRKNRQMKY TYFKTVLNSS SYKVGARRAH RIQTALNGGF 240 EHTRISEIDF KNFKRDAVAC VANKDATMLI NKPSNRRDEL SRIFWADEVA RINYKEFGDV 300 ISFDGTFRTN KHAMIFVPFL AVDNHKSFVV VGSALISVET IDNFTWVLKA FLKCHAKQPV 360 FVITDQCSAM KQAIPKVFTE SKHRLCMWHI MKKVPSKVSV ALNHDTTFNK VINKLVWNIH 420 IGPTEFERRW NKMVDKYNLA GDTWFTEMYE IRHSWIPTYY KNMPMSGLMK TTSRSESSNL 480 YINIYESYWF DLVQFLNNYD VAIEKQRYRQ SIHESVTRTT NPKFLTPLRI ERHASSIYSR 540 NVFFDIQKEI KKVGCNYSTN TVECDCNLFT RNGYLCRHAF KVLINDEVER IPEKYVLRRW 600 KRELVPVQIQ SARVRYGEVN VEKEKSISEL YSKMDDIISI ARNDQSILDR LGRNLEEFMV 660 DIEKEVPYED PSQQKLDAIR DHLGVSIPDE MDILPPSGIR NKGCGTGKRL VSVSEKMQTN 720 CKKAKQKCAT CGQRSGHDSR NCPELID

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence

VNVNDKLNSG YEYGRNTIPD DEEDDQSVPI DSIIVIPTLI PQSNFFFPSD LDSITSSQQE  60
VDNDIEESSE GIQFFIPKVD DALKPNMKSQ YATINEVEKM YMAYADNAGF DVRMHVKKTN  120
KHGEIQTRWF VCSREGNPKK KEFDSLYMQP GERRYRNTNI KRCGCNACIK IHLTKDRACY  180
EIYEFVEAHN HALFNINDRR FSRKNRQMKY TYFKTVLNSS SYKVGARRAH RIQTALNGGF  240
EHTRISEIDF KNFKRDAVAC VANKDATMLI NKPSNRRDEL SRIFWADEVA RINYKEFGDV  300
ISFDGTFRTN KHAMIFVPFL AVDNHKSFVV VGSALISVET IDNFTWVLKA FLKCHAKQPV  360
FVITDQCSAM KQAIPKVFTE SKHRLCMWHI MKKVPSKVSV ALNHDTTFNK VINKLVWNIH  420
IGPTEFERRW NKMVDKYNLA GDTWFTEMYE IRHSWIPTYY KNMPMSGLMK TTSRSESSNL  480
YINIYESYWF DLVQFLNNYD VAIEKQRYRQ SIHESVTRTT NPKFLTPLRI ERHASSIYSR  540
NVFFDIQKEI KKVGCNYSTN TVECDCNLFT RNGYLCRHAF KVLINDEVER IPEKYVLRRW  600
KRELVPVQIQ SARVRYGEVN VEKEKSISEL YSKMDDIISI ARNDQSILDR LGRNLEEFMV  660
DIEKEVPYED PSQQKLDAIR DHLGVSIPDE MDILPPSGIR NKGCGTGKRL VSVSEKMQTN  720
CKKAKQKCAT CGQRSGHDSR NCPELID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-61	FAR1 family protein