PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964501.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 671aa MW: 78032.1 Da PI: 8.2149

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964501.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.8e-21	117	212	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA+++GF+vr +++k++ +ng i +r+fvC++eg+++++ e++ r+++ +r+gC a++kv+++k ++ +e++++ + HnH+ XP_024964501.1 117 KMYRAYANNAGFDVRLHAKKTN-KNGDIQTRWFVCNREGTPNKQFFYsmdmqsGERRYRNTNLKRCGCLACIKVHLKKdKSGYEIYEFIEAHNHA 210 68***********9987777.7888**********998776788877777888999***********98999*********** PP FAR1 89 la 90 l+ XP_024964501.1 211 LF 212 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MGTTSKTEIG SPVSINSEHD FARVLNRIRN TVVMIFSVDQ ANMDKRNGKE IDNNVEITKV 60 CEDNPSSGVP ILXISEHEPE YAVEECSQGN QFFIPKVDGD LKPKINSHFL TINEAEKMYR 120 AYANNAGFDV RLHAKKTNKN GDIQTRWFVC NREGTPNKQF FYSMDMQSGE RRYRNTNLKR 180 CGCLACIKVH LKKDKSGYEI YEFIEAHNHA LFNTNDRCFS RKNRQMKYTD YKNVLNSPSY 240 KVGAIRAHRI QTALNGGFEH NRCYEIDFKN FKRDAVACVG KKDAKMLINK LSNRRDIVPG 300 YFFEYKCNDQ ELGAIFWADE VARLNYKEFG DVISFDGTFR TNKHAMSFVP FLAVDNHKAL 360 VVVGSALISG ETIENFTWLV WNVNIGPSEF ETKWQEMIEQ YNLGRDPWFT EMYEIRASWI 420 PAFYKDTPMS GLMKTTSRSE SSNSYINIYE SYWFDLVQFL NNYDFAIEKQ RYKQAVHETI 480 TRTTYPKLFT PLRLESQASR VYSRNVFYDI QKEIKKAVWS CSIETGECRG DLKMFIISHK 540 KKKSHVNTTY LVSRNYTTNT VECECNLFTR NGYLCRHAFK ALINDEVESI PNQYVLRRWK 600 QNLVPVQIQS AKICYGEVDA EKDKSIIDVY SKVDHIISIA RNDKSILTRL EQNLDNFTVD 660 IEKEVPYEDP S

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MGTTSKTEIG SPVSINSEHD FARVLNRIRN TVVMIFSVDQ ANMDKRNGKE IDNNVEITKV  60
CEDNPSSGVP ILXISEHEPE YAVEECSQGN QFFIPKVDGD LKPKINSHFL TINEAEKMYR  120
AYANNAGFDV RLHAKKTNKN GDIQTRWFVC NREGTPNKQF FYSMDMQSGE RRYRNTNLKR  180
CGCLACIKVH LKKDKSGYEI YEFIEAHNHA LFNTNDRCFS RKNRQMKYTD YKNVLNSPSY  240
KVGAIRAHRI QTALNGGFEH NRCYEIDFKN FKRDAVACVG KKDAKMLINK LSNRRDIVPG  300
YFFEYKCNDQ ELGAIFWADE VARLNYKEFG DVISFDGTFR TNKHAMSFVP FLAVDNHKAL  360
VVVGSALISG ETIENFTWLV WNVNIGPSEF ETKWQEMIEQ YNLGRDPWFT EMYEIRASWI  420
PAFYKDTPMS GLMKTTSRSE SSNSYINIYE SYWFDLVQFL NNYDFAIEKQ RYKQAVHETI  480
TRTTYPKLFT PLRLESQASR VYSRNVFYDI QKEIKKAVWS CSIETGECRG DLKMFIISHK  540
KKKSHVNTTY LVSRNYTTNT VECECNLFTR NGYLCRHAFK ALINDEVESI PNQYVLRRWK  600
QNLVPVQIQS AKICYGEVDA EKDKSIIDVY SKVDHIISIA RNDKSILTRL EQNLDNFTVD  660
IEKEVPYEDP S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	540	545	KKKKSH
2	541	546	KKKKSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	5e-36	FAR1 family protein