PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964485.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 296aa MW: 32295.2 Da PI: 5.007

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.3e-10	145	189	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P++ K +Ka++L + +Y+k L XP_024964485.1 145 HSIAERLRRERIAERMRALQELVPSC-----NKTDKAAMLDEILDYVKFL 189 99*********************8.....6**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MATDPPEGYG DDFLEQILAI PSYNIAGCLP TGNTSDAAAS ETVSVHHQQQ QQSVFPLGLS 60 LDNGRETIGA FTGGQQQQQQ RERGGNMNMG GLFPPFENLQ SHSLLHTVPQ AFQGQPTTST 120 AVTVPHPPTI RPRVRARRGQ ATDPHSIAER LRRERIAERM RALQELVPSC NKTDKAAMLD 180 EILDYVKFLR LQVKVLSMSR LGGAGAVAQL VSDVPLQSVE GDASENGYNQ PAWENWSNDD 240 TEREVAKLME EDVGAAMQFL QSKALCIMPI SLASLIYPTH QPDTNSLVKP EPSAPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	155	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	6e-78	bHLH family protein