PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024964426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 266aa MW: 29853.2 Da PI: 6.939 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.3 | 5.7e-13 | 77 | 129 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +hn+ Er RR+r+N+ ++ Lr+llP + ++kK+s ++ +A +YI +L XP_024964426.1 77 KKLNHNASERDRRKRVNDLYAFLRSLLPMS-VDQKKKVSIPGTVSRALKYIPEL 129 6789*************************7.378888**************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence |
MLALSPPLFS TTYGWPLEDL IAQNLQQDYC NEANSYHSLL DFPSFDPIQQ DFVPENSISY 60 GGAVNGGTVD DLMMVAKKLN HNASERDRRK RVNDLYAFLR SLLPMSVDQK KKVSIPGTVS 120 RALKYIPELE KEVETLLRKK EKLWSYSSST ATPMQERLSI KKQSAKDATI KTKSLVISSV 180 SVLGEKEAVI QLISSTDHMS KNKEVGLFSK VLEYLEQEED GLVLLNATSF KCSGEGTLLN 240 TLHLQVQGDK KIEAEKLKEK LCSFQQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-36 | bHLH family protein |