PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024964420.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 623aa MW: 73340.2 Da PI: 9.8074

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024964420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.5	3.3e-16	1	95	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Y++YA ++ F+vr++++k++ ++g+i +r+fvCs+eg++++++ + e++ ++++ +r+g +a+lk++++k g +e++++++ Hn +l+ XP_024964420.1 1 MYRAYADKARFDVRVHAKKTN-KHGNIQNRWFVCSREGYPNKRQFNsleihpGERRYHNTNLKRCGYNACLKIHLTKdGGCYEIYEFVKAHNQALF 95 6************998887.7777**************9999988888899***************9899**********9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MYRAYADKAR FDVRVHAKKT NKHGNIQNRW FVCSREGYPN KRQFNSLEIH PGERRYHNTN 60 LKRCGYNACL KIHLTKDGGC YEIYEFVKAH NQALFNINDH RFSRKNRQMK YTDFKTVLNN 120 SSYKVSARRA HRIQTALNGG FEHTRVSKID FKNFKRDAVA CVGNKDAQML INKLSNRRDI 180 VPGYFFKYKC NKQELIAIFW ADEVARINYK EFVDVISFDG MFRTNKHAMI FMPFLAVDNH 240 KASVVVGSAL ISGETIENFT WVSKAFLKCH EKQPIFVITD QCSAMKQAIP MVFTEAKHRL 300 CMWHIMKNVP SKVSVALNQD PIFNKVINKL VWNIHIGPAE FERRWHEMID QYNLGGDSWF 360 TGMYSIRHSW IPAFYKNTPM SGLMKTTSRS ESSNSYINIY ESYWFDLVQF LNNYDVTIEK 420 QRYRQSVHET VTRTTNPKFV TLLHLESYAS SIYSRNVFFN IQKEIKKAVW FCAIETVECR 480 DDLKSFVISH KIKKSSENIT YLVNRNYSTD TVECECNLFT RNGYLCRHAF KVLINDEVEF 540 IPDRYVLRRW KRQLVPVQIQ SARVRYGEVD AEKDKCIIDV YSKVDKIISI ARNDKSILAR 600 LVRNLEKFMV DIEKEVPYED PSQ

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MYRAYADKAR FDVRVHAKKT NKHGNIQNRW FVCSREGYPN KRQFNSLEIH PGERRYHNTN  60
LKRCGYNACL KIHLTKDGGC YEIYEFVKAH NQALFNINDH RFSRKNRQMK YTDFKTVLNN  120
SSYKVSARRA HRIQTALNGG FEHTRVSKID FKNFKRDAVA CVGNKDAQML INKLSNRRDI  180
VPGYFFKYKC NKQELIAIFW ADEVARINYK EFVDVISFDG MFRTNKHAMI FMPFLAVDNH  240
KASVVVGSAL ISGETIENFT WVSKAFLKCH EKQPIFVITD QCSAMKQAIP MVFTEAKHRL  300
CMWHIMKNVP SKVSVALNQD PIFNKVINKL VWNIHIGPAE FERRWHEMID QYNLGGDSWF  360
TGMYSIRHSW IPAFYKNTPM SGLMKTTSRS ESSNSYINIY ESYWFDLVQF LNNYDVTIEK  420
QRYRQSVHET VTRTTNPKFV TLLHLESYAS SIYSRNVFFN IQKEIKKAVW FCAIETVECR  480
DDLKSFVISH KIKKSSENIT YLVNRNYSTD TVECECNLFT RNGYLCRHAF KVLINDEVEF  540
IPDRYVLRRW KRQLVPVQIQ SARVRYGEVD AEKDKCIIDV YSKVDKIISI ARNDKSILAR  600
LVRNLEKFMV DIEKEVPYED PSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-61	FAR1 family protein