PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024964262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22765.2 Da PI: 9.7667 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.5 | 1.3e-16 | 15 | 59 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 krien+ r vt+skR n i+KKA+ L +LC +++a+i+fs gk XP_024964262.1 15 KRIENEKERAVTLSKRCNDIFKKANKLATLCHIQIAIILFSIIGK 59 79**************************************97765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
MARLPSKDRK KIQLKRIENE KERAVTLSKR CNDIFKKANK LATLCHIQIA IILFSIIGKR 60 LSFGSPNVQS VVNKFLNPNQ LDQQPNDFIN MAVNSNHESK LQDFNKEFDE VNEHLANEKK 120 QGQMLDEYIK RLLGGKTYKE YVAIRGYYGF MQIKFKMEEL QRNKECTLVA VCGPSSSNDE 180 NEAYLSKIGV PKDYLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-20 | M-type_MADS family protein |