PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963988.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 400aa MW: 45830.1 Da PI: 7.8475

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963988.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.3	3.8e-50	28	153	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ XP_024963988.1 28 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTEN 121 79*************************.89***********8778899************************************* PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+g+apkg +t+W+m+eyrl XP_024963988.1 122 SRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 153 ****************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MMNQEEAMSN RKQNKQEDDD DHENDMVMPG FRFHPTEEEL VEFYLRRKVE GKRFNVELIT 60 FLDLYRYDPW ELPALAAIGE KEWFFYVPRD RKYRNGDRPN RVTTSGYWKA TGADRMIRTE 120 NSRSIGLKKT LVFYSGKAPK GIRTSWIMNE YRLPHQETER LQKAEISLCR VYKRAGVEDH 180 PSLPRTLPTT RATSSRSSHG DKKQHSQNLL SFHSFEGQNS NQNDDKLSET SGSSSTDLVG 240 TALGLSSPLN PSYNNFMTSF PPIATTLPPQ TSSLIPHCTP TASSSVFPNS VDDLHRIISY 300 QQASVNNPAS QAFHIHNYQH KFSNNLSPHF STSNLLPQPQ LQPQPLQPQS QQHLQMQPNS 360 QALLALNNLA GEVQVTFPER LWEWNQMPSE GNKDYTNPFK

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MMNQEEAMSN RKQNKQEDDD DHENDMVMPG FRFHPTEEEL VEFYLRRKVE GKRFNVELIT  60
FLDLYRYDPW ELPALAAIGE KEWFFYVPRD RKYRNGDRPN RVTTSGYWKA TGADRMIRTE  120
NSRSIGLKKT LVFYSGKAPK GIRTSWIMNE YRLPHQETER LQKAEISLCR VYKRAGVEDH  180
PSLPRTLPTT RATSSRSSHG DKKQHSQNLL SFHSFEGQNS NQNDDKLSET SGSSSTDLVG  240
TALGLSSPLN PSYNNFMTSF PPIATTLPPQ TSSLIPHCTP TASSSVFPNS VDDLHRIISY  300
QQASVNNPAS QAFHIHNYQH KFSNNLSPHF STSNLLPQPQ LQPQPLQPQS QQHLQMQPNS  360
QALLALNNLA GEVQVTFPER LWEWNQMPSE GNKDYTNPFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-112	NAC family protein