PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963984.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 1018aa MW: 114388 Da PI: 6.5405

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.6	4.1e-08	94	123	61	90
FAR1 61 gCkaklkvkkekdgkwevtkleleHnHela 90 gC+a+l+++ + ++ w vtk+++eHnH+++ XP_024963984.1 94 GCNAMLRIESKGQNSWAVTKFVKEHNHSIT 123 8**************************975 PP
2	FAR1	24	1.2e-07	241	269	61	89
FAR1 61 gCkaklkvkkekdgkwevtkleleHnHel 89 gC+a+l+++ + ++ w+vtk+++eHnH++ XP_024963984.1 241 GCNATLRIESKGQNSWVVTKFVKEHNHSV 269 8**************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1018 aa Download sequence
MSVEEESMGQ HGVAFDRYDD FDGAADPAGI STPQDKDREF EPHLGLEFAY VDAAKTFYNE 60 YAKRVGFTTR VNQIARPTSD VAVREYSCAT SGDGCNAMLR IESKGQNSWA VTKFVKEHNH 120 SITNTCKGHY HRQQRHFSGA TKDAAGVMSV EEERMGKHGV AFGRYDDLDG AADPAGISTA 180 QDKDRETEPH LGLEFAYVDA AKTFYNEYAK RVGFTICVNQ ITRPTSDVAV REFSCATSGD 240 GCNATLRIES KGQNSWVVTK FVKEHNHSVT NTSKVHYHRQ RRHVSGATKI AVESYPMVGV 300 VPSGVMYLSM DGNRVPAETN RGSRSASMES NRAVQISDSI ANSARHATSK RSLGRDAQNL 360 LDYLRKMQAE NPGFYYAIQL DEDNRMSNVF WADARSRTAY SHFGDAITLD TMYRVKQYKV 420 PFAPFTGINH HGQTILFGCA LLLDDSECTF TWLFKTFLAA MGDQAPVSII TDPEKSIQAA 480 VAQVFPGTRH CISKWHVLRE GPDRLAHVCH MHPNFQAELY NCINLTETIE EFETAWDLIL 540 DRYDLRRNDW LQLLYAVRQQ WVPSYFHDTF FAAISFNQGS ESSFFVGYVN EHTTVPLFFR 600 QYERALENSF EKEIEADFDT ICTTPILRTP SPMEKQAASL YTKTIFSKFQ EELVETFVYT 660 ANRIDGDGAV STFRVAKFED DQKAYLVSLN IEELRASCSC QMFEYSGILC RHILTVFTVT 720 NVLTLPSHYI LKRWTRNAKC NIALEERADV NGQESLAIRY NQLLREAIKF SEEGAIAPDT 780 FTVAMAALRE GGEKVAAVKT NVASFAPPSS QVSVIGYDSR KTTSSAPDMT PLLWPRQDEV 840 TRRFNLNDAG LLAQSVTDLN LPRMAPVSLR RDDGHPDNMV ILPCLKSMTW VMENRTLAPA 900 NRVAVINLKL QDHRRSPASE SEVKFQLSTL TLEPMLRSMA YINEQLSAPA NRVAVINLKL 960 QDTDTSSGES EVKFQVSRDT LGAMLRSMAY IREQLSNSNA AESASEIPSK RPRKERTN

Sequence ? help Back to Top

Protein Sequence Length: 1018 aa Download sequence

MSVEEESMGQ HGVAFDRYDD FDGAADPAGI STPQDKDREF EPHLGLEFAY VDAAKTFYNE  60
YAKRVGFTTR VNQIARPTSD VAVREYSCAT SGDGCNAMLR IESKGQNSWA VTKFVKEHNH  120
SITNTCKGHY HRQQRHFSGA TKDAAGVMSV EEERMGKHGV AFGRYDDLDG AADPAGISTA  180
QDKDRETEPH LGLEFAYVDA AKTFYNEYAK RVGFTICVNQ ITRPTSDVAV REFSCATSGD  240
GCNATLRIES KGQNSWVVTK FVKEHNHSVT NTSKVHYHRQ RRHVSGATKI AVESYPMVGV  300
VPSGVMYLSM DGNRVPAETN RGSRSASMES NRAVQISDSI ANSARHATSK RSLGRDAQNL  360
LDYLRKMQAE NPGFYYAIQL DEDNRMSNVF WADARSRTAY SHFGDAITLD TMYRVKQYKV  420
PFAPFTGINH HGQTILFGCA LLLDDSECTF TWLFKTFLAA MGDQAPVSII TDPEKSIQAA  480
VAQVFPGTRH CISKWHVLRE GPDRLAHVCH MHPNFQAELY NCINLTETIE EFETAWDLIL  540
DRYDLRRNDW LQLLYAVRQQ WVPSYFHDTF FAAISFNQGS ESSFFVGYVN EHTTVPLFFR  600
QYERALENSF EKEIEADFDT ICTTPILRTP SPMEKQAASL YTKTIFSKFQ EELVETFVYT  660
ANRIDGDGAV STFRVAKFED DQKAYLVSLN IEELRASCSC QMFEYSGILC RHILTVFTVT  720
NVLTLPSHYI LKRWTRNAKC NIALEERADV NGQESLAIRY NQLLREAIKF SEEGAIAPDT  780
FTVAMAALRE GGEKVAAVKT NVASFAPPSS QVSVIGYDSR KTTSSAPDMT PLLWPRQDEV  840
TRRFNLNDAG LLAQSVTDLN LPRMAPVSLR RDDGHPDNMV ILPCLKSMTW VMENRTLAPA  900
NRVAVINLKL QDHRRSPASE SEVKFQLSTL TLEPMLRSMA YINEQLSAPA NRVAVINLKL  960
QDTDTSSGES EVKFQVSRDT LGAMLRSMAY IREQLSNSNA AESASEIPSK RPRKERTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein