PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024963980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 1027aa MW: 115287 Da PI: 6.5406 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.5 | 4.2e-08 | 103 | 132 | 61 | 90 |
FAR1 61 gCkaklkvkkekdgkwevtkleleHnHela 90 gC+a+l+++ + ++ w vtk+++eHnH+++ XP_024963980.1 103 GCNAMLRIESKGQNSWAVTKFVKEHNHSIT 132 8**************************975 PP | |||||||
2 | FAR1 | 24 | 1.3e-07 | 250 | 278 | 61 | 89 |
FAR1 61 gCkaklkvkkekdgkwevtkleleHnHel 89 gC+a+l+++ + ++ w+vtk+++eHnH++ XP_024963980.1 250 GCNATLRIESKGQNSWVVTKFVKEHNHSV 278 8**************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1027 aa Download sequence |
MKPSLDAGVM SVEEESMGQH GVAFDRYDDF DGAADPAGIS TPQDKDREFE PHLGLEFAYV 60 DAAKTFYNEY AKRVGFTTRV NQIARPTSDV AVREYSCATS GDGCNAMLRI ESKGQNSWAV 120 TKFVKEHNHS ITNTCKGHYH RQQRHFSGAT KDAAGVMSVE EERMGKHGVA FGRYDDLDGA 180 ADPAGISTAQ DKDRETEPHL GLEFAYVDAA KTFYNEYAKR VGFTICVNQI TRPTSDVAVR 240 EFSCATSGDG CNATLRIESK GQNSWVVTKF VKEHNHSVTN TSKVHYHRQR RHVSGATKIA 300 VESYPMVGVV PSGVMYLSMD GNRVPAETNR GSRSASMESN RAVQISDSIA NSARHATSKR 360 SLGRDAQNLL DYLRKMQAEN PGFYYAIQLD EDNRMSNVFW ADARSRTAYS HFGDAITLDT 420 MYRVKQYKVP FAPFTGINHH GQTILFGCAL LLDDSECTFT WLFKTFLAAM GDQAPVSIIT 480 DPEKSIQAAV AQVFPGTRHC ISKWHVLREG PDRLAHVCHM HPNFQAELYN CINLTETIEE 540 FETAWDLILD RYDLRRNDWL QLLYAVRQQW VPSYFHDTFF AAISFNQGSE SSFFVGYVNE 600 HTTVPLFFRQ YERALENSFE KEIEADFDTI CTTPILRTPS PMEKQAASLY TKTIFSKFQE 660 ELVETFVYTA NRIDGDGAVS TFRVAKFEDD QKAYLVSLNI EELRASCSCQ MFEYSGILCR 720 HILTVFTVTN VLTLPSHYIL KRWTRNAKCN IALEERADVN GQESLAIRYN QLLREAIKFS 780 EEGAIAPDTF TVAMAALREG GEKVAAVKTN VASFAPPSSQ VSVIGYDSRK TTSSAPDMTP 840 LLWPRQDEVT RRFNLNDAGL LAQSVTDLNL PRMAPVSLRR DDGHPDNMVI LPCLKSMTWV 900 MENRTLAPAN RVAVINLKLQ DHRRSPASES EVKFQLSTLT LEPMLRSMAY INEQLSAPAN 960 RVAVINLKLQ DTDTSSGESE VKFQVSRDTL GAMLRSMAYI REQLSNSNAA ESASEIPSKR 1020 PRKERTN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1 family protein |