PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963952.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TALE

Protein Properties

Length: 458aa MW: 50814 Da PI: 6.4338

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.3	1.1e-07	407	440	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + XP_024963952.1 407 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 440 569*****************************87 PP
2	ELK	28.7	3e-10	361	382	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ XP_024963952.1 361 ELKHELKQGYKEKIVDIREEIL 382 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MAYHPNHISQ DMALQQHFSD TDNNSVLRTI LPEHHHLASA AQSPSSSRSA GKDHWLNSAI 60 LRQQGQFGGD GNNNNSNIFL NLQTNNNNSD SAATTSSQHH QQQSGNNQWL SRSILQRNVS 120 DVRGDDGIPQ VSNDSIMAAT AVNVMSSHNS PDLNNHSRNV AAGQVDNNVG GELGETEVGA 180 GDGGGGALMN WQNARQKAEV LSHPLYEQLL AAHVACLRIA TPVDQLPRID AQLAQSQQVV 240 SKYSALGGHN NLVHDDKELD QFMTHYVLLL CSFKDQLQQH VRVHAMEAVM ACWEIEQSLQ 300 SLTGVSPGEG TGATMSDDDE DQVDSDANLY DGSLDGHDSM GFGPLVPTES ERSLMERVRQ 360 ELKHELKQGY KEKIVDIREE ILRKRRAGKL PGDTTSVLKA WWQSHAKWPY PTEEDKARLV 420 QETGLQLKQI NNWFINQRKR NWHSNPSSST VLKSKRKR

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MAYHPNHISQ DMALQQHFSD TDNNSVLRTI LPEHHHLASA AQSPSSSRSA GKDHWLNSAI  60
LRQQGQFGGD GNNNNSNIFL NLQTNNNNSD SAATTSSQHH QQQSGNNQWL SRSILQRNVS  120
DVRGDDGIPQ VSNDSIMAAT AVNVMSSHNS PDLNNHSRNV AAGQVDNNVG GELGETEVGA  180
GDGGGGALMN WQNARQKAEV LSHPLYEQLL AAHVACLRIA TPVDQLPRID AQLAQSQQVV  240
SKYSALGGHN NLVHDDKELD QFMTHYVLLL CSFKDQLQQH VRVHAMEAVM ACWEIEQSLQ  300
SLTGVSPGEG TGATMSDDDE DQVDSDANLY DGSLDGHDSM GFGPLVPTES ERSLMERVRQ  360
ELKHELKQGY KEKIVDIREE ILRKRRAGKL PGDTTSVLKA WWQSHAKWPY PTEEDKARLV  420
QETGLQLKQI NNWFINQRKR NWHSNPSSST VLKSKRKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	438	458	RKRNWHSNPSSSTVLKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.2	1e-173	TALE family protein