PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024963901.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 414aa    MW: 47455 Da    PI: 7.3996
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024963901.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.54.2e-116364132373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...sv..selykal.ppsetsekn...sseelaalkl...f 84 
                      +lLl cA+ +ss+d+++a++l++ ls ++sp+gd+  Rl++ ft+AL+ rl++   +   +++ +++ +p++t   +    ++ +  +k    +
  XP_024963901.1  36 HQLLLYCAQLISSSDFSAAHRLISFLSAISSPAGDSSDRLVHSFTKALSLRLHHlrrHHppQTTINTItTPTPT---TrccKDDDTILQKSylsL 127
                     689************************************************99742111112233333133333...23454444444444467* PP

            GRAS  85 sevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                     ++++P+++fs+ltaNqaIl+a++++   + +HiiDfd ++G+QWp+L+qa+a+R ++ppslR+T+ g     + + l++tg+rL+kfA++lg++f
  XP_024963901.1 128 NQITPFIRFSQLTANQAILDAIDQShhhQFIHIIDFDTMHGVQWPPLMQAIAER-HPPPSLRLTATGT----NPDILRKTGDRLSKFANSLGLKF 217
                     ***********************9988899***********************9.899**********....99********************* PP

            GRAS 177 efnvl...vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                     +f+++    +++++dl  +l++  ++p+E+laVn+vl lhrll+++ +l s    +Lk +k+++P+vv+++e e++hn +sF+ rf eal+yy+a
  XP_024963901.1 218 RFHPIllpNEDNTHDLidHLSTVVLHPNETLAVNCVLYLHRLLKNRDNLCS----LLKKIKTMNPRVVTMAEIESNHNYPSFMSRFGEALKYYAA 308
                     ****98776667777755677778888****************88877777....**************************************** PP

            GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359
                     +fdslea+lp++s+er+ vE++++grei +vva+eg++    he++++W++++ ++ GF++v+ s++a +qak+llr ++ s+gy++   +++++
  XP_024963901.1 309 VFDSLEATLPPNSQERMEVEEVWFGREIADVVAAEGER----HERFRSWEMMMiRNGGFEKVSWSSFAISQAKMLLRLHYpSEGYKLVVVDDCFC 399
                     ************************************86....********98736689************************************* PP

            GRAS 360 lgWkdrpLvsvSaW 373
                     lgW+++pL+svS+W
  XP_024963901.1 400 LGWRNQPLFSVSSW 413
                     ************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    
MVGSSSHSHH QEEYNSQLDP PPRTAEHHHH HHTHMHQLLL YCAQLISSSD FSAAHRLISF  60
LSAISSPAGD SSDRLVHSFT KALSLRLHHL RRHHPPQTTI NTITTPTPTT RCCKDDDTIL  120
QKSYLSLNQI TPFIRFSQLT ANQAILDAID QSHHHQFIHI IDFDTMHGVQ WPPLMQAIAE  180
RHPPPSLRLT ATGTNPDILR KTGDRLSKFA NSLGLKFRFH PILLPNEDNT HDLIDHLSTV  240
VLHPNETLAV NCVLYLHRLL KNRDNLCSLL KKIKTMNPRV VTMAEIESNH NYPSFMSRFG  300
EALKYYAAVF DSLEATLPPN SQERMEVEEV WFGREIADVV AAEGERHERF RSWEMMMIRN  360
GGFEKVSWSS FAISQAKMLL RLHYPSEGYK LVVVDDCFCL GWRNQPLFSV SSWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-103GRAS family protein