PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963894.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 804aa MW: 93569.8 Da PI: 8.835

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.6	7.5e-22	190	284	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +Y++YA ++GF+vr++ +k++ +ngei +r+fvCs++g++++++ + e+ r+++ +r+gC+a++k++++k ++ +e++++++ HnH+l XP_024963894.1 190 MYRAYADNAGFDVRMHVKKTN-KNGEIQTRWFVCSRKGNPKKKDFDslymqpGERIYRNTNIKRCGCNACIKIHLTKdRACYEIYEFVEAHNHAL 283 8***********9877666.8999************99999998889999****************98999***********9 PP FAR1 90 a 90 + XP_024963894.1 284 F 284 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence
MRQQRWLELL KDYDVRIQYH PGKANIVADA LSRKAVEQVS SLIVSTELAL EIERFGLEIY 60 PRRVGAVTYR LALPPQLTHV HNVFHVSSLR GYNYNPLHVI EYPLDHIEPD LSYREEPEAI 120 LDRDERDSSN IEPNYFFPSD LDGITSSQQE VDYDIGESSE GIKFFILKVD NALKPKMKAQ 180 YATINEVERM YRAYADNAGF DVRMHVKKTN KNGEIQTRWF VCSRKGNPKK KDFDSLYMQP 240 GERIYRNTNI KRCGCNACIK IHLTKDRACY EIYEFVEAHN HALFNNNDRR FSRKNRQMKY 300 TDFKTVINRS SYKVGTRRAH RIQTALNGGF EHTRISEIDF KNFKRDAELS AIFWVDEVAR 360 INYKEFGDVI SFDGTFRTNK HAMIFVPFLA VDNHKASVVV GSALISGETI DNFTWVLKAF 420 LKCHAKQLVF VITDQCSAMK QAILKVFTES KHRLCMWHIM KKVPSKVSVA LNHDPTFNKV 480 INKLVWNIHI GPSEFESRWN EMIDKYNLAG DTWFTEMYEI RHSWILGYYK DTPMSGLMKT 540 TSRSESSNSY INIYELYLFD LVQFLNNYDV AIEKQRYRQS VHETVTRTTN PKFVTPLHLE 600 SHASSIYSRN VFFDIQKEIK KAVWFCAIET VECRDDFKSF AISHKAKKSA DNITYLVGRN 660 YSTNTVECDC NLFTRNGYLC HHAFKVLIND EVECIPEKYV LRRWKRELVP VQIQSARVRY 720 GEVNTEKEKL GRNLDKFMVD IEKEVPYEDP SQQKLDAIRD HLGVSIADEV DILPPSGIRN 780 KGCGTGKRLV SVSEKMQTNC KKAK

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence

MRQQRWLELL KDYDVRIQYH PGKANIVADA LSRKAVEQVS SLIVSTELAL EIERFGLEIY  60
PRRVGAVTYR LALPPQLTHV HNVFHVSSLR GYNYNPLHVI EYPLDHIEPD LSYREEPEAI  120
LDRDERDSSN IEPNYFFPSD LDGITSSQQE VDYDIGESSE GIKFFILKVD NALKPKMKAQ  180
YATINEVERM YRAYADNAGF DVRMHVKKTN KNGEIQTRWF VCSRKGNPKK KDFDSLYMQP  240
GERIYRNTNI KRCGCNACIK IHLTKDRACY EIYEFVEAHN HALFNNNDRR FSRKNRQMKY  300
TDFKTVINRS SYKVGTRRAH RIQTALNGGF EHTRISEIDF KNFKRDAELS AIFWVDEVAR  360
INYKEFGDVI SFDGTFRTNK HAMIFVPFLA VDNHKASVVV GSALISGETI DNFTWVLKAF  420
LKCHAKQLVF VITDQCSAMK QAILKVFTES KHRLCMWHIM KKVPSKVSVA LNHDPTFNKV  480
INKLVWNIHI GPSEFESRWN EMIDKYNLAG DTWFTEMYEI RHSWILGYYK DTPMSGLMKT  540
TSRSESSNSY INIYELYLFD LVQFLNNYDV AIEKQRYRQS VHETVTRTTN PKFVTPLHLE  600
SHASSIYSRN VFFDIQKEIK KAVWFCAIET VECRDDFKSF AISHKAKKSA DNITYLVGRN  660
YSTNTVECDC NLFTRNGYLC HHAFKVLIND EVECIPEKYV LRRWKRELVP VQIQSARVRY  720
GEVNTEKEKL GRNLDKFMVD IEKEVPYEDP SQQKLDAIRD HLGVSIADEV DILPPSGIRN  780
KGCGTGKRLV SVSEKMQTNC KKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-63	FAR1 family protein