PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963810.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

C2H2

Protein Properties

Length: 1054aa MW: 115125 Da PI: 8.0186

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963810.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	901	923	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F+ ++ ++rH+ H XP_024963810.1 901 HQCHICGLRFKLQERFERHLEWH 923 79*****************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 1054 aa Download sequence
MEMDSTSRGR PFDRSSRDPA TLKKPRLLTE ETPFLRGSSN VPNGGGRPLV QRQPVFGFRS 60 TAERDRDSEG NDSIRSGGGY QPQSLTQSQL QQQQHHELVS QYRTALAELT FNSKPIITNL 120 TIIAGENVQA AKAIAATICT NILEVPRDQK LPSLYLLDSI VKNIGRDYIK YFAARLPEVF 180 CKAYRQVDSA VHPGMRHLFG TWKGVFPLQS LQFIEKELGF QSATNGSSSG LAASRSEPQP 240 QRPXRSIHVN PKYLEARQRL QQSSTAKGPT SDTNLMNSPE DTERQDRITA NISSVRPRAD 300 PRLKNIQQAQ RDVESTCLRE NDGAPYSDFD YCSDVLIPSE ASFGKSSEIV AEQGFDNSWY 360 GAGSNTTETI SGQRNGFDVK HGFPNLSASR TANADVKLQP MNNIASKRGG EANRSWKNSE 420 EEEYMWDDMN SRLAIPGKSG SSSKRDPRAH PMNEKLGFEN RLQKPQGIQN IGLRVDREAS 480 SDSLSANQKD GAVFRQPVQS LSSLRNLLDH EEVHSTSFGG VSTSVNSLSK TSLQPQMGAS 540 HVGTQPLGFP PNAITGQRHT LAAASPSGQA PTHQRPPSPS FPTYHSSKIL HNLSGRDPPT 600 TRQLVGADGK PARSRGQKNT GLSSQSTQDS FQGIXQISHM XNPQKXQIRN LQTSSXQLPL 660 HSKKHAPLHP GTXSEPSQSP XIKIVDANLL DHSKSPVABI XGPSTTENLL AAVSSIFGNK 720 SVAGSILQMN SQTESNSGPP LPSXPPPTQF TSSGPSVMSS HPSPSSRDSI LPLPPGPPSL 780 VGSTSTQTSS MATAVSNPVS NLLSTLVAKG LIYASKADTP DASPTRSQSP KIDTPPSHTV 840 PAVVSSVLST SSINNESSLS NVKSTQSTTV DIKSLIGFEF KPDVIRRSHP AVISELIDLP 900 HQCHICGLRF KLQERFERHL EWHTLKNPEF NTPNKVSRRW FRNSYDWGTE KPELQSSDHN 960 ILPVDSLEAA VEIDGEQMVA ADESQCVCIL CGELFDDFYS QELBKWMFRR AVHLNIKDGE 1020 AGNIGGPIVH AHCISKNSLS DLELSNDVKR EEGE

Sequence ? help Back to Top

Protein Sequence Length: 1054 aa Download sequence

MEMDSTSRGR PFDRSSRDPA TLKKPRLLTE ETPFLRGSSN VPNGGGRPLV QRQPVFGFRS  60
TAERDRDSEG NDSIRSGGGY QPQSLTQSQL QQQQHHELVS QYRTALAELT FNSKPIITNL  120
TIIAGENVQA AKAIAATICT NILEVPRDQK LPSLYLLDSI VKNIGRDYIK YFAARLPEVF  180
CKAYRQVDSA VHPGMRHLFG TWKGVFPLQS LQFIEKELGF QSATNGSSSG LAASRSEPQP  240
QRPXRSIHVN PKYLEARQRL QQSSTAKGPT SDTNLMNSPE DTERQDRITA NISSVRPRAD  300
PRLKNIQQAQ RDVESTCLRE NDGAPYSDFD YCSDVLIPSE ASFGKSSEIV AEQGFDNSWY  360
GAGSNTTETI SGQRNGFDVK HGFPNLSASR TANADVKLQP MNNIASKRGG EANRSWKNSE  420
EEEYMWDDMN SRLAIPGKSG SSSKRDPRAH PMNEKLGFEN RLQKPQGIQN IGLRVDREAS  480
SDSLSANQKD GAVFRQPVQS LSSLRNLLDH EEVHSTSFGG VSTSVNSLSK TSLQPQMGAS  540
HVGTQPLGFP PNAITGQRHT LAAASPSGQA PTHQRPPSPS FPTYHSSKIL HNLSGRDPPT  600
TRQLVGADGK PARSRGQKNT GLSSQSTQDS FQGIXQISHM XNPQKXQIRN LQTSSXQLPL  660
HSKKHAPLHP GTXSEPSQSP XIKIVDANLL DHSKSPVABI XGPSTTENLL AAVSSIFGNK  720
SVAGSILQMN SQTESNSGPP LPSXPPPTQF TSSGPSVMSS HPSPSSRDSI LPLPPGPPSL  780
VGSTSTQTSS MATAVSNPVS NLLSTLVAKG LIYASKADTP DASPTRSQSP KIDTPPSHTV  840
PAVVSSVLST SSINNESSLS NVKSTQSTTV DIKSLIGFEF KPDVIRRSHP AVISELIDLP  900
HQCHICGLRF KLQERFERHL EWHTLKNPEF NTPNKVSRRW FRNSYDWGTE KPELQSSDHN  960
ILPVDSLEAA VEIDGEQMVA ADESQCVCIL CGELFDDFYS QELBKWMFRR AVHLNIKDGE  1020
AGNIGGPIVH AHCISKNSLS DLELSNDVKR EEGE