PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024963662.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GeBP
Protein Properties Length: 378aa    MW: 41721 Da    PI: 7.8845
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024963662.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.94.2e-35149247198
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskk 94 
                     klfqrlwse+Dei l++G+i++ +++gk+p++d+++f+efvkks++++v+++q+++K+rrLKkKf+++v+k  ++gk  sfs++h++ ++elsk+
  XP_024963662.1 149 KLFQRLWSENDEIELIKGMISYVEEKGKDPVADVNDFHEFVKKSLDVDVNNRQMTTKVRRLKKKFENNVAKvENKGKVRSFSNPHEKVMYELSKS 243
                     579******************************************************************997889******************** PP

          DUF573  95 iWgs 98 
                     +Wgs
  XP_024963662.1 244 LWGS 247
                     **95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MARSENETSN SSSAEEEELS SEGSESESEP DKTSTPPPSS KKSQLTPNSS SDESETESES  60
DTEKTPEKSL VPYPNVKPLA SKPMDDDGDD QLKKPRSKNP TIRYSPPVHK PSTGKRPATV  120
VEGGDLKRIK KKTVVAVAAP DAENNGEKKL FQRLWSENDE IELIKGMISY VEEKGKDPVA  180
DVNDFHEFVK KSLDVDVNNR QMTTKVRRLK KKFENNVAKV ENKGKVRSFS NPHEKVMYEL  240
SKSLWGSDGT NNAVMSSRVK KVNVTPKTNK NRKDSKAVGS GNGNGGIEVI PFEVEPKVVH  300
AAPSGNEVDH LGLMGMPVTD EMIMNKGLEL VSGAKKVELQ QKWKNLKVLE LKHFVEKVKL  360
LKEQAEVVLD AIEKSGAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.18e-26GeBP family protein