PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963482.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 652aa MW: 76184.5 Da PI: 8.1216

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963482.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.5	7.8e-17	130	224	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Y++YA+++GF+vr+s++k + +g i ++ fvCs+ g + +++ + +++e r+++ +r+gC+ ++k +++k + ++e + e++HnH+l XP_024963482.1 130 VYQKYAETAGFEVRRSSQKIN-XDGVIQNKYFVCSRFGLPLKKSFDsivcrkHQREVRNSNIKRIGCTTCVKFRLMKgTTTYEFYGSEEDHNHSL 223 6************998877.9999************9999999998899999*****************9*************99 PP FAR1 90 a 90 XP_024963482.1 224 L 224 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence
MKNNGKNPID SSIHVNSHED SVDFNSHEEN VGVMEVVTWE SNEDFDVGLS PFKKVQKNYE 60 EIVLVEDIET LGMDDTTGYI SNNEIQNDEN LEQGLSISLG GTNWYTSVVE EVVKPIIGSV 120 YPSLDVAESV YQKYAETAGF EVRRSSQKIN XDGVIQNKYF VCSRFGLPLK KSFDSIVCRK 180 HQREVRNSNI KRIGCTTCVK FRLMKGTTTY EFYGSEEDHN HSLLRNDDMD LTRKGRQMKF 240 SDQRFVHDAG ISNMGATRTH KLHISLRGGY EYGGPTVVDY QKYKRDCDNF VGRGDAKVLV 300 DLMTKKRDAD HNFLFEHSMV FVPFTAVDNH NCNVIVGSAL VRHEHVPNYK WLLQAFRKAH 360 SKPPMMILTD QCSVMKQAIA SVFPDSRHRL CIWHIMNKVP NKFSYDLLNN TTFKKQFFKL 420 VWNIHISPDX FESRWMVLIE EFSLQDHAWL KDIFALRSQW IPAYFRELTM CCLMKKHPGR 480 KFMLGFEFAL EKQRREQRRL DYHTRTTLPK WFTYSKLERH ACEIYMCSVF FEGQTEIHRA 540 AWTCSIKSIN SNEEAETYLT ENLDKRDVKI AEYKVVRKLK ESTIVCSCNH IGRHGYLCRH 600 VFKVLLNVGV ESIPEEYILI RWRRDLIPIE LQNSRQIICD VGEDQRRIKR YI

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence

MKNNGKNPID SSIHVNSHED SVDFNSHEEN VGVMEVVTWE SNEDFDVGLS PFKKVQKNYE  60
EIVLVEDIET LGMDDTTGYI SNNEIQNDEN LEQGLSISLG GTNWYTSVVE EVVKPIIGSV  120
YPSLDVAESV YQKYAETAGF EVRRSSQKIN XDGVIQNKYF VCSRFGLPLK KSFDSIVCRK  180
HQREVRNSNI KRIGCTTCVK FRLMKGTTTY EFYGSEEDHN HSLLRNDDMD LTRKGRQMKF  240
SDQRFVHDAG ISNMGATRTH KLHISLRGGY EYGGPTVVDY QKYKRDCDNF VGRGDAKVLV  300
DLMTKKRDAD HNFLFEHSMV FVPFTAVDNH NCNVIVGSAL VRHEHVPNYK WLLQAFRKAH  360
SKPPMMILTD QCSVMKQAIA SVFPDSRHRL CIWHIMNKVP NKFSYDLLNN TTFKKQFFKL  420
VWNIHISPDX FESRWMVLIE EFSLQDHAWL KDIFALRSQW IPAYFRELTM CCLMKKHPGR  480
KFMLGFEFAL EKQRREQRRL DYHTRTTLPK WFTYSKLERH ACEIYMCSVF FEGQTEIHRA  540
AWTCSIKSIN SNEEAETYLT ENLDKRDVKI AEYKVVRKLK ESTIVCSCNH IGRHGYLCRH  600
VFKVLLNVGV ESIPEEYILI RWRRDLIPIE LQNSRQIICD VGEDQRRIKR YI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-57	FAR1 family protein