PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963208.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 460aa MW: 53241.9 Da PI: 7.794

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.3	1.4e-19	132	226	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +Y++YA+e+GF+vr s++k + ++g+i++r +vCskeg++ ++ + ++ r+++++r gC a+lk++ k + ++ev+k+ ++HnH + XP_024963208.1 132 MYRKYANEAGFDVRLSNKKIN-KKGRIMSRFYVCSKEGRPPSKYFDsldvlpGDRMIRNSNVKRSGCGACLKIQFVKeRRQYEVYKFIEQHNHMI 225 8*************98887.6677**********999988999999999999************99989************97 PP FAR1 90 a 90 + XP_024963208.1 226 F 226 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MDYMPFNEIF SKDIVEESSV FDSMNDCQDF DYGGENATAV NNETIEDQAN YSMRNEDGFN 60 DRNETVSEHN DGVFVDFVDI DVASLSNEAE DYQSDAMGET NEGSKFWFPN VDAEYKPKVG 120 DGFETVESVE RMYRKYANEA GFDVRLSNKK INKKGRIMSR FYVCSKEGRP PSKYFDSLDV 180 LPGDRMIRNS NVKRSGCGAC LKIQFVKERR QYEVYKFIEQ HNHMIFNKEE MRFSRSKRQL 240 HYTDHKNVFH GSSSKVGVTK SHRFRKAITG GVDCSGGTVR DHQNFKRDMA YFVGNKDAQM 300 LLNVMSNRRK VCPEFFFEYK CDDKELLAIF WADEIARSNY REFGDAISFD ATFRTNKHAM 360 IFVPFVAIDN HKKSVVVGAA LIHNESVVDY TWVLKAFVKA HGRQPRFVIT DQCVSMKQAI 420 LIAFPESKHR LCMWHITKKL KSKIXNYLQH RTPLLANLIS

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MDYMPFNEIF SKDIVEESSV FDSMNDCQDF DYGGENATAV NNETIEDQAN YSMRNEDGFN  60
DRNETVSEHN DGVFVDFVDI DVASLSNEAE DYQSDAMGET NEGSKFWFPN VDAEYKPKVG  120
DGFETVESVE RMYRKYANEA GFDVRLSNKK INKKGRIMSR FYVCSKEGRP PSKYFDSLDV  180
LPGDRMIRNS NVKRSGCGAC LKIQFVKERR QYEVYKFIEQ HNHMIFNKEE MRFSRSKRQL  240
HYTDHKNVFH GSSSKVGVTK SHRFRKAITG GVDCSGGTVR DHQNFKRDMA YFVGNKDAQM  300
LLNVMSNRRK VCPEFFFEYK CDDKELLAIF WADEIARSNY REFGDAISFD ATFRTNKHAM  360
IFVPFVAIDN HKKSVVVGAA LIHNESVVDY TWVLKAFVKA HGRQPRFVIT DQCVSMKQAI  420
LIAFPESKHR LCMWHITKKL KSKIXNYLQH RTPLLANLIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-41	FAR1 family protein