PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024963147.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

DBB

Protein Properties

Length: 311aa MW: 34138.4 Da PI: 7.5169

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024963147.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23	1.7e-07	4	35	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++++e++ +C ++ lC C + H+ XP_024963147.1 4 QCDVCNQNEASVYCSADEAALCSACDHNVHHA 35 7****************************744 PP
2	zf-B_box	29.8	1.2e-09	55	96	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 ++C+ ++ek++ lfC++++ lC+dC +++Hk H XP_024963147.1 55 STVCDICQEKKAFLFCQQDRAILCKDCDVAIHKVnqqklnhH 96 579*****************************6566667755 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MKIQCDVCNQ NEASVYCSAD EAALCSACDH NVHHANKLAG KHPRFSLLHP SSKDSTVCDI 60 CQEKKAFLFC QQDRAILCKD CDVAIHKVNQ QKLNHHRFLL TGVKLSPTAS LYSPSTPPAA 120 IPTAKNHHKP LPSPIVNQTP VKTHDCSHQE SNGSGQGSTT SSISEYLIEM LPGWHVEDFL 180 DPPPNNFSKV VDNDPALIWG CDALDGSLNA SFSPESMGIW VPQAPPPASK PPTPPPLYDH 240 LVQQFEPSSN IGFGDQTVNG SSIVFAPNNY NNLNKMKKSS RKWTSDNGNC FTVPQIRPPP 300 TTTKRSRTLW H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-65	DBB family protein