PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024963139.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 37909 Da PI: 6.9199 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.6 | 1.4e-10 | 202 | 250 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y++sLq XP_024963139.1 202 NSHSLAERVRRERISERMKLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 250 58**************************....999*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence |
MASSEDDNND SEMGFQYRGE MSSGSMFNNK SSSGSGNLFG SGWDPLENFG GSSSMVAVPP 60 NSELAYPENH QVQVGLIHQY QSGSGIAAGS GIADLVPKVG SFGSGSFSEM VNPFGNLNPE 120 CGGSSSPNSR DKRKSPHPQF NPITNGKREE RNDEKKQRIE ANWRGKQMGK QAKENSTDSG 180 GGGPTKDNNY IHVRAKRGQA TNSHSLAERV RRERISERMK LLQELVPGCN KITGKAVMLD 240 EIINYVQSLQ QQVEFLSMKL ATVNPELNID IERLVFKDMV HSRGSSSNPG FGFSSSHSYP 300 HGSLTGIPTT TAPLHPIHPQ PVWDNDLHSL LQMGFDANLG QNGGGAKMDV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 8e-58 | bHLH family protein |