PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024962943.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family FAR1
Protein Properties Length: 733aa    MW: 85107.6 Da    PI: 8.1715
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024962943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.56.1e-2090185190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                     k+Y++YA ++ F+v+++++k++ ++g i +r++vCs++g++++++ +       e++ r+++ +r gC+a++k++++k ++ +e++++++ HnH+
  XP_024962943.1  90 KMYRTYADNADFDVCIHAKKTN-KHGDIQTRWLVCSRQGTPRKKDFDlldmhvGERRYRNTNIKRFGCNACIKIHLTKdRASYEIYEFVEAHNHA 183
                     68**************998887.6667****************9999****9888888999****************9999************** PP

            FAR1  89 la 90 
                     l+
  XP_024962943.1 184 LF 185
                     97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    
MDNTSVNHID NIGNGEVKHG YGYVRNSNSG DEEDDQSLSI GADNIISSQQ EIDYDIVESS  60
KGIKFFTPKV DDALKPNTNT QYALMNEVEK MYRTYADNAD FDVCIHAKKT NKHGDIQTRW  120
LVCSRQGTPR KKDFDLLDMH VGERRYRNTN IKRFGCNACI KIHLTKDRAS YEIYEFVEAH  180
NHALFDINDR RFSQKNRQMK YTDFKTVLNS SSYKVGARRA HRIQTALNGV FEHTRVSEID  240
FKNFKRDAVA CVGNKDAKML INKLSNRRDI VPGFFFEYKC NEQELSAIFW ADEVARINYK  300
EFDDVISFDG TFRTNKHAMI FVPFLAVDNH KASVVVGSAL ISDQCSAMKQ AIPMVFTEAK  360
HRLCMWHIMK KVPSKVSAAL NHDPNFNKVI NKLVWNIHIG PTEYETRWHE MIHQFNLGGD  420
TWFTEMYEIR HSWIPAYYKD TPMSGLMKTT SRFESSNSYI NIYESYWFDL VQFLNNYDVA  480
IEKQRYRQSI HENVMRTTNP KFATPLCLES HASSIYSRNV FFDIQKEIKK AVWFCNIETV  540
ECRDELKSFV ISHKTKISSN KITYQVCRNY STNTVECDCN LFTRNGSLCR HAFKVLINDE  600
VESIPEKYVL RRWKRQLVPV QIQSARVRYG EVDAEKEKCI IDVYSKVDDI VSIARNDKYI  660
LARLGRNLDK FMGDIEKEVP YEDPSQQKLD AIRDHLGVSI LDEVDILPSS GIWNKGCGTG  720
KRLDRFRCLV AVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-52FAR1 family protein