PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024962930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | C3H | ||||||||
Protein Properties | Length: 281aa MW: 29699.4 Da PI: 9.5011 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.9 | 1.3e-06 | 110 | 122 | 15 | 27 |
-TTTTT-SS-SSS CS zf-CCCH 15 CkyGdrCkFaHgp 27 Ck+Gd+C+FaH++ XP_024962930.1 110 CKFGDKCRFAHSE 122 ***********95 PP | |||||||
2 | zf-CCCH | 26.5 | 1.1e-08 | 251 | 276 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+ C +f + G C +G+rC+FaHgp XP_024962930.1 251 FKTKMCENFGK-GLCTFGERCHFAHGP 276 69*********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence |
MDFGGRKRGR QDGGWNGAPK RARDEMESFT PGVGSKSKPC TKFFSTSGCP FGEGCHFLHY 60 VPGGYHAPSP LTNMGGPLGR KSQMQQPFTD GLAPAVKNKL CNKINTPEGC KFGDKCRFAH 120 SEAEIGGRPS FPGYENQRGP MNYGGGGYQA SPPGLAGANF GQSATAKISI DASLAGAVIG 180 KGGVNSKQIC RITGVKLAIR DHETDENQKN IELEGSFDQI KQASAMVREV IMNLGGGNGG 240 ARKGGGGGNN FKTKMCENFG KGLCTFGERC HFAHGPNELR T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-70 | C3H family protein |