PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962789.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GeBP

Protein Properties

Length: 348aa MW: 39014.1 Da PI: 10.2271

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962789.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	79.6	4.8e-25	61	155	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 +f+r+w+e Dei +LqGl+d+ +++g s d+ y +++ +s ++ksql+eK+rrL+kKf+ +++ ++g ++++ +++d+ ++lsk++W XP_024962789.1 61 KFHRIWTEPDEIRFLQGLLDC-SSQGLSFPRDLGMYYARFSHGMSQPYTKSQLSEKLRRLRKKFRVISSRLSKGLDKALLSPQDRALYDLSKQLW 154 699****************.788999999************************************************************** PP DUF573 97 g 97 + XP_024962789.1 155 E 155 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MDFTPPSNPI QQPSPISSIP SSAKLPIKRK TPASNLILAP PKLESTTHFA DDDDARHPPF 60 KFHRIWTEPD EIRFLQGLLD CSSQGLSFPR DLGMYYARFS HGMSQPYTKS QLSEKLRRLR 120 KKFRVISSRL SKGLDKALLS PQDRALYDLS KQLWEPDLDR PSSPSAVTNF NSNPNNNYRY 180 NSNLVGVKPS YSQTLPSSSM AVLALPSVIK KTNTRDNGNK GNNHGGGGGD DRKGDFNGDM 240 KLSDMNAEME RNPQVVRNEV RVKSGNEARV KSGGDTSSGV VHFATKTLAD VLDQSLKEIR 300 MMIDLQGHSK LEKDMSFEKR WRDQHIAEFD AFAKRLKLIV EHSSVVSK

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MDFTPPSNPI QQPSPISSIP SSAKLPIKRK TPASNLILAP PKLESTTHFA DDDDARHPPF  60
KFHRIWTEPD EIRFLQGLLD CSSQGLSFPR DLGMYYARFS HGMSQPYTKS QLSEKLRRLR  120
KKFRVISSRL SKGLDKALLS PQDRALYDLS KQLWEPDLDR PSSPSAVTNF NSNPNNNYRY  180
NSNLVGVKPS YSQTLPSSSM AVLALPSVIK KTNTRDNGNK GNNHGGGGGD DRKGDFNGDM  240
KLSDMNAEME RNPQVVRNEV RVKSGNEARV KSGGDTSSGV VHFATKTLAD VLDQSLKEIR  300
MMIDLQGHSK LEKDMSFEKR WRDQHIAEFD AFAKRLKLIV EHSSVVSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	3e-17	GeBP family protein