PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962776.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 674aa MW: 78266.6 Da PI: 7.9279

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.3e-20	104	198	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +Y++YA ++GF+vr++ +k++ +ngei +r+fvCs+eg++++++ + e++ r+++ +r+gC+a++k++++k ++ +e++++++ Hn +l XP_024962776.1 104 MYRAYADNAGFDVRMHVKKTN-KNGEIQTRWFVCSREGNPKKKDFDslymqsGERRYRNTNIKRCGCNACIKIHLTKdRSCYEIYEFVEAHNDAL 197 8***********9877666.8999************99999987778888999*************9999**********988 PP FAR1 90 a 90 + XP_024962776.1 198 F 198 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MKNPIVKEFQ NNENDKLNSG YQYGRNSITD DEEDGQSVPI DSSNIEPNYF FPSDIDSITS 60 SQQEVDYDIG ESSKGIKFFI PKVDDALKPN MKAQYATINE VERMYRAYAD NAGFDVRMHV 120 KKTNKNGEIQ TRWFVCSREG NPKKKDFDSL YMQSGERRYR NTNIKRCGCN ACIKIHLTKD 180 RSCYEIYEFV EAHNDALFNN NDRRFSRKNR QMKYTYFKTE LSAIFWADEV ARINYKELGD 240 VISFDGTFRT NKHAMIFVPF MAVDNHKASV VVGSALISGE TIDNFTWVLE AFLKCHVKQP 300 VFVITDQCSA MKQAIPKVFT ESKHRLCMWH IMKKVPSKVS VALNHDPTFN KVINKLVWNI 360 HIGPSEFENR WNEMIDKYNL AGDTWFTEMY EIRHSWIPAY YKDTPMSGLM KTTSRSESSN 420 SYINIYESYW FDLVQFLNNY DVAIEIQRYR QSVHETVTRT TNPKFVTLLR LESHASSIYS 480 RNMFFDIQKE IKKAVWFCAI ETVECRDDFK SFVISHKAKK SADNITYLVG RNYSTNTVEC 540 DCNLFTRNGY LCHHAFKIQS ARVRYGEVNA EKEKSIIDVY SKIDDIISIX XNDQXILDRL 600 GRNLDKFXVD IEKEVPYEDP SQQKLDAIRD HLGVSIPDEV DILPPSGIRN KGCGTGKRLV 660 SVSEKVQTNC KKTK

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MKNPIVKEFQ NNENDKLNSG YQYGRNSITD DEEDGQSVPI DSSNIEPNYF FPSDIDSITS  60
SQQEVDYDIG ESSKGIKFFI PKVDDALKPN MKAQYATINE VERMYRAYAD NAGFDVRMHV  120
KKTNKNGEIQ TRWFVCSREG NPKKKDFDSL YMQSGERRYR NTNIKRCGCN ACIKIHLTKD  180
RSCYEIYEFV EAHNDALFNN NDRRFSRKNR QMKYTYFKTE LSAIFWADEV ARINYKELGD  240
VISFDGTFRT NKHAMIFVPF MAVDNHKASV VVGSALISGE TIDNFTWVLE AFLKCHVKQP  300
VFVITDQCSA MKQAIPKVFT ESKHRLCMWH IMKKVPSKVS VALNHDPTFN KVINKLVWNI  360
HIGPSEFENR WNEMIDKYNL AGDTWFTEMY EIRHSWIPAY YKDTPMSGLM KTTSRSESSN  420
SYINIYESYW FDLVQFLNNY DVAIEIQRYR QSVHETVTRT TNPKFVTLLR LESHASSIYS  480
RNMFFDIQKE IKKAVWFCAI ETVECRDDFK SFVISHKAKK SADNITYLVG RNYSTNTVEC  540
DCNLFTRNGY LCHHAFKIQS ARVRYGEVNA EKEKSIIDVY SKIDDIISIX XNDQXILDRL  600
GRNLDKFXVD IEKEVPYEDP SQQKLDAIRD HLGVSIPDEV DILPPSGIRN KGCGTGKRLV  660
SVSEKVQTNC KKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-46	FAR1 family protein