PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962583.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 671aa MW: 77589.3 Da PI: 10.1566

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.7	9.5e-19	72	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA+e+GF+vr s++kk+ + g+it+r +vCsk+g++ ++ + +++ +++ ++ gC a++k++ k + ++ev+k++++HnH XP_024962583.1 72 KMYQKYANEAGFDVRLSNKKKN-KIGRITSRFYVCSKKGRPPSKYFDsldvlpGDRRIPNTNIKHSGCGACFKIHFVKeRRQYEVYKFVEQHNHM 165 68*************99998.5666**********9999889999977777779999********99989************9 PP FAR1 89 la 90 l+ XP_024962583.1 166 LF 167 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MATKSGLELA CKSNISWKDG MKTISLLLWT NYYRSDGMGE TNDGSKCWFS NVDTKYKPKV 60 GDGFETVESA EKMYQKYANE AGFDVRLSNK KKNKIGRITS RFYVCSKKGR PPSKYFDSLD 120 VLPGDRRIPN TNIKHSGCGA CFKIHFVKER RQYEVYKFVE QHNHMLFNKK EMRFSRSKRQ 180 LHYTNHKNVF HGSSSKVGVT KSHRFRKAIM GGVDSSGGTV RDHQNFKRDM AYFVGNKDAQ 240 MLLNVMSNRR KRFSGLMKLP RSNYREFGDA ISFNATFRTN KHVMIFVSFV AIDNHKKSVV 300 VGAALIHNES VVDYTWVLKA FVKAHGRQPR FVITDQCASM KQTILIAFPR SKHPLCMWHI 360 TKKVKSKISN YLQHRTPFVS EFNKLVWNVH LAPDEFEMKW NNMMDLYGLR GDSWFDELYE 420 ITESWIPAYY KDYHMSGLMK TTSSQRTTHG SLEVTTKSTI PRLVSPCKLE AHAAEVVKNK 480 MENSYDCSCN CFVRNGILCR HAFKVMLNDE VDIIPDKYIL RRWRRDLVPV EWLPARFRYG 540 EVDADKERLM SVAYSYFERI LGRVRNEKHI LSKFVDQLEE WDTKIDSELP IQSHAQETTT 600 SIKEFLGVSQ PETIDVLPPT GIRNKGCGTG KKLISAAEKA ITNGKKLKRK CRLCCQMATH 660 DSRNCPKRDS T

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MATKSGLELA CKSNISWKDG MKTISLLLWT NYYRSDGMGE TNDGSKCWFS NVDTKYKPKV  60
GDGFETVESA EKMYQKYANE AGFDVRLSNK KKNKIGRITS RFYVCSKKGR PPSKYFDSLD  120
VLPGDRRIPN TNIKHSGCGA CFKIHFVKER RQYEVYKFVE QHNHMLFNKK EMRFSRSKRQ  180
LHYTNHKNVF HGSSSKVGVT KSHRFRKAIM GGVDSSGGTV RDHQNFKRDM AYFVGNKDAQ  240
MLLNVMSNRR KRFSGLMKLP RSNYREFGDA ISFNATFRTN KHVMIFVSFV AIDNHKKSVV  300
VGAALIHNES VVDYTWVLKA FVKAHGRQPR FVITDQCASM KQTILIAFPR SKHPLCMWHI  360
TKKVKSKISN YLQHRTPFVS EFNKLVWNVH LAPDEFEMKW NNMMDLYGLR GDSWFDELYE  420
ITESWIPAYY KDYHMSGLMK TTSSQRTTHG SLEVTTKSTI PRLVSPCKLE AHAAEVVKNK  480
MENSYDCSCN CFVRNGILCR HAFKVMLNDE VDIIPDKYIL RRWRRDLVPV EWLPARFRYG  540
EVDADKERLM SVAYSYFERI LGRVRNEKHI LSKFVDQLEE WDTKIDSELP IQSHAQETTT  600
SIKEFLGVSQ PETIDVLPPT GIRNKGCGTG KKLISAAEKA ITNGKKLKRK CRLCCQMATH  660
DSRNCPKRDS T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-42	FAR1 family protein