PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024962573.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 353aa MW: 38553.7 Da PI: 5.4517 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 3.9e-12 | 108 | 159 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++h +Er+RR+++N+ + Lr l+P + k+ + a+i +v+YI +Lq XP_024962573.1 108 QKVSHITVERNRRKQMNEHLTVLRALMPCF---YVKRGDQASIIGGVVDYIAELQ 159 6899*************************9...9*******************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence |
MSGDRCTSLT DFFDSYAGQF EETNFLSPST ASTNDIFSIL EVFEGGSDEF TSMMPLETGF 60 HAKDHKSTSS CSVLQDLVEA ELEMLSPKTK RQKLSSVDQG GANSDGQQKV SHITVERNRR 120 KQMNEHLTVL RALMPCFYVK RGDQASIIGG VVDYIAELQQ VLQSLEAKKQ RKVYSDVLSP 180 RLVSSSPRPS PLSPRKPPIS PRPLLPISPR TPQPVSPYKP RFQQPATTNS SYIPPIPSPM 240 AANLTPPSLE PSPSSSSSTS DIVNELVANS KSAIADVEVK FSGPNLLLKT ISPRLPGQAT 300 KIVSVLEDLS LEILQASINT ADETMVQSFT IKIGIECQLS AEDLVEHIQQ TFS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06120.1 | 9e-50 | bHLH family protein |