PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024962572.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 817aa    MW: 87853.4 Da    PI: 5.736
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024962572.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.9e-21119174156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  XP_024962572.1 119 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 174
                     688999***********************************************999 PP
2START197.27.2e-623285501206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ eep+W +      e+ n+ e+ + +++  +     + +ea+r++g+v+ ++  lve+l+d++ +W e+++    + +t+
  XP_024962572.1 328 ELALAAMDELVKLAQTEEPLWLRTLeggrEIMNQNEYSRAITPCIGlkpneYVSEASRETGMVIINSLALVETLMDSN-KWAEMFPcmiaRTSTT 421
                     5899*********************99998888888888888888899**9***************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vis+g      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++  s +  +++lpSg+++++++ng+skvtwveh+
  XP_024962572.1 422 DVISNGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRENS--SAFSSCRRLPSGCVVQDMPNGYSKVTWVEHA 514
                     ************************************************************96..6888899************************ PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++ +h+l+r+l++ g+ +ga++wva+lqrqce+
  XP_024962572.1 515 EYDESAVHELYRPLIRAGMGFGAQRWVAALQRQCEC 550
                     **********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    
MSFGGFLDNS HGGGDGGGSG GGARIVADIP YHMRGGAMSK SMFSSPGLSL ALQTTMEGGG  60
GGGGVGEMGR MPESYETSGG GGGRRSREEE HESRSGSDNM DGGASGDDPD ADDGKPPRKK  120
RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSRRLCLETR QVKFWFQNRR TQMKTQLERH  180
ENSILRQEND KLRAENMSIR EAMRNPICTN CGGPAMIGDI SLEEQHLRIE NARLKDELDR  240
VCALAGKFLG HPISSMAPPM PNSSLELGVG GNHFGGGGRV LSSTASALPL GPPDFGVGIS  300
SASSVPSSRA NNNVMGIDHS LERSMYLELA LAAMDELVKL AQTEEPLWLR TLEGGREIMN  360
QNEYSRAITP CIGLKPNEYV SEASRETGMV IINSLALVET LMDSNKWAEM FPCMIARTST  420
TDVISNGMGG TRNGALQLMH AELQVLSPLV PVREVNFLRF CKQHAEGVWA VVDVSIDTIR  480
ENSSAFSSCR RLPSGCVVQD MPNGYSKVTW VEHAEYDESA VHELYRPLIR AGMGFGAQRW  540
VAALQRQCEC LAILMSSAVP SRDHTAITAS GRKSMLKLAQ RMTDNFCAGV CASTVYKWNK  600
LCANNVDEDV RVMTRQSVDD PGEPPGIVLS AATSVWLPVS PQRLFDFLRD ERLRSEWDIL  660
SNGGPMQEMA HIAKGQDHGN CVSLLRASAM NANQSSMLIL QETCIDAAGS LVVYAPVDIP  720
AMHVVMNGGD SAYVALLPSG FAIVPDGPGN RGVSETDNGG VGGGSGGGAG GSLLTVAFQI  780
LVNSLPTAKL TVESVETVNN LISCTVQKIK AALPSDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein