PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962514.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 682aa MW: 78639.9 Da PI: 9.4296

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.2	9.9e-22	55	150	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA ++GF+vr +++k++ +ng i +r+fvC+keg+++++ + e++ r+++ +r+gC a++kv+++k ++ +e++++++ HnH+ XP_024962514.1 55 KMYRAYADNAGFDVRLHAKKTN-KNGDIQTRWFVCNKEGTPNKQFFDsmdmqsGERRYRNTNLKRCGCLACIKVHLKKdKSGYEIYEFVEAHNHA 148 68***********9987777.7888**********999877888877777888999***********98999*********** PP FAR1 89 la 90 l+ XP_024962514.1 149 LF 150 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence
MVVSTGVPIL AISEHEPEYA VEECSQGNQF FIPKVDEKLK PKINSHFLTI NEAEKMYRAY 60 ADNAGFDVRL HAKKTNKNGD IQTRWFVCNK EGTPNKQFFD SMDMQSGERR YRNTNLKRCG 120 CLACIKVHLK KDKSGYEIYE FVEAHNHALF NTNDRRFSRK NRQMKYTDYK NVLNSSSYKV 180 GAIRAHRIQT ALNGGFEHNR CSEIDFKNFK RDAVACVGKK DAKMLINKLS NRHAMIFVPF 240 LAVDNHKASV VVGSALISGE TIENFTWVLR AFLKCHEKQP VFVITDQCSV MKQAVPLISV 300 ALNQDPIFNK VINKLVWNIH IGPSEFETKW QEMIEQYNLG RDPWFTEMYE IRASWIPAFY 360 KDTPMSGLMK TTSRSESSNS YINIYESYWF DLVQFLNNYD VAIEKQRYKQ AVHETTTRTT 420 YPKLCTPLRL ESQASRVYSR NVFFDIQKEI KKAVWSCRIE TGECRGDLKM FIISQKKKKS 480 SVNTTYLVSR NYTANTVECE CNLFTRNGYM CRHAFKVLIN DEVESIPNQY VLRRWKQNLV 540 PVQIQSAKIR YGEVDAKKDK SIIDVYSKVD NIISIARNDK SILTRFEQNL DNFTADIEKE 600 VPYEDPSQQK LDAIRDHLGV SIPDDVDILQ PSGIRNKGCG TGKRLVSVSE KIQTASKKAR 660 RKCATCGKRT GHDSRNCPEL IG

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence

MVVSTGVPIL AISEHEPEYA VEECSQGNQF FIPKVDEKLK PKINSHFLTI NEAEKMYRAY  60
ADNAGFDVRL HAKKTNKNGD IQTRWFVCNK EGTPNKQFFD SMDMQSGERR YRNTNLKRCG  120
CLACIKVHLK KDKSGYEIYE FVEAHNHALF NTNDRRFSRK NRQMKYTDYK NVLNSSSYKV  180
GAIRAHRIQT ALNGGFEHNR CSEIDFKNFK RDAVACVGKK DAKMLINKLS NRHAMIFVPF  240
LAVDNHKASV VVGSALISGE TIENFTWVLR AFLKCHEKQP VFVITDQCSV MKQAVPLISV  300
ALNQDPIFNK VINKLVWNIH IGPSEFETKW QEMIEQYNLG RDPWFTEMYE IRASWIPAFY  360
KDTPMSGLMK TTSRSESSNS YINIYESYWF DLVQFLNNYD VAIEKQRYKQ AVHETTTRTT  420
YPKLCTPLRL ESQASRVYSR NVFFDIQKEI KKAVWSCRIE TGECRGDLKM FIISQKKKKS  480
SVNTTYLVSR NYTANTVECE CNLFTRNGYM CRHAFKVLIN DEVESIPNQY VLRRWKQNLV  540
PVQIQSAKIR YGEVDAKKDK SIIDVYSKVD NIISIARNDK SILTRFEQNL DNFTADIEKE  600
VPYEDPSQQK LDAIRDHLGV SIPDDVDILQ PSGIRNKGCG TGKRLVSVSE KIQTASKKAR  660
RKCATCGKRT GHDSRNCPEL IG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-38	FAR1 family protein