PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024962343.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 200aa MW: 23226.1 Da PI: 7.9307 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.3 | 1.1e-24 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA+ELSvLCdae+ + ifs +gklye + XP_024962343.1 10 RIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 47.2 | 9.3e-17 | 82 | 172 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++e++ +++ e++ Lk+eie Lq+ +R + + ++++l eL+ Le++Le + +iRs K++++ ++i+ l++ke l+ +nk+L++++e XP_024962343.1 82 ADEKQVLESKMEVNMLKNEIEVLQKGLRYMFEGGAGKMTLDELRILENNLEVWMYHIRSAKMDIMSQEIQLLKNKEGILKAANKCLQEQME 172 567888899******************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MARGKVQMRR IENPVHRQVT FCKRRSGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATN 60 GSMQGLLEKY MKSTRCYVEE QADEKQVLES KMEVNMLKNE IEVLQKGLRY MFEGGAGKMT 120 LDELRILENN LEVWMYHIRS AKMDIMSQEI QLLKNKEGIL KAANKCLQEQ MEMQYDAANT 180 DPIMTNIPYP LTVQNEIYQY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-75 | MIKC_MADS family protein |