PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962312.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CAMTA

Protein Properties

Length: 1081aa MW: 121306 Da PI: 5.5768

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	179.5	4.1e-56	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL n++k+++++e+ +rp++gsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+ee+++fqr XP_024962312.1 20 SEaQHRWLRPAEICEILRNYTKFRIASEPGNRPPNGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSIDVLHCYYAHGEEDENFQR 114 4449***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+ywlLeeel++ivlvhy+evk XP_024962312.1 115 RSYWLLEEELSHIVLVHYREVK 136 *****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1081 aa Download sequence
MAEGRRYALG AQLDIEQILS EAQHRWLRPA EICEILRNYT KFRIASEPGN RPPNGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEEDE NFQRRSYWLL 120 EEELSHIVLV HYREVKGNRT NTNRIREVGE ATPNSLESEE NISSSEVDGS VSSKFSTYNY 180 PVASQTTDNS TQASEYEDAE SAYSHQSTSR YSSVVNLQPS VTAKTDDHLS MPYYPVPSSN 240 DYDGKFQANP DMSFVSLMQG DRGENNLDAD LTYKSQKHLD LPSWDNCFET QAAGSQPASY 300 QPTHLSTQSY NASILPGRGN EMLRQVMADG FDKVQEFRGN SGWQLDAEYN VPSRFQGEVS 360 YAEIFNSFET TIAVDESKPL AQGNLELHFA NEDGWKSVKP NLEGNPTLDD KSVSMKPPFL 420 EGFMKEGLKK LDSFDRWMSK ELGDVKESQT QSTSGTYWEA VESENGVDDS IISPQVHLDS 480 YVLGPSLSQD QLFSIIDFSP NCAYAGSKIK VLITGRFLRS QQELQHCEWA CMFGEVEVRA 540 EVVADGVLRC HTPEHMPGRV HFYVTCSNRL ACSEVREFEF QVNENQDMDA PDMIGDNSNE 600 MLLHMRFVKL LSLGSGAAQN SFPRVNDPEL MNQLSSLIQE DNSEWDQMLK LTSEEEFSSE 660 KARNQLFQKL LKEKLYAWLL HKIAEGGKGP SVLDEGGQGV LHFAGALGYD WAIAPTVAAG 720 VSINFRDVNG WTALHWAANC GRERTVAFLI SQDAAAGALT DPTPRYPSGR TPADLASSNG 780 DKGIAGYCAE AALSTHFKLI GLKDPKEGDG GHISGSKVVQ TVSERTPTPV SHGDMTQGLS 840 LKDSLAAVCN ATQAAARIHQ VFRVQSFQKK QLKEHGGNEF GMSDERALSL LALKTARTGQ 900 HDESGHAAAV RIQNKFRSWK GRKDFLIMRQ RIVKIQAHVR GHQVRKNYRK IVWSVGILDK 960 VILRWRRKGS GLRGFKPEPI AEGSTTVAKP SKEDDDDFFK EGRKQTEQRL QKALARVKSM 1020 VQYPEARDQY RRLLNVVSDM QESKAVYDKA LENSEEAVDF DEDLIDLDAL LDDDDDALMT 1080 I

Sequence ? help Back to Top

Protein Sequence Length: 1081 aa Download sequence

MAEGRRYALG AQLDIEQILS EAQHRWLRPA EICEILRNYT KFRIASEPGN RPPNGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSIDVLH CYYAHGEEDE NFQRRSYWLL  120
EEELSHIVLV HYREVKGNRT NTNRIREVGE ATPNSLESEE NISSSEVDGS VSSKFSTYNY  180
PVASQTTDNS TQASEYEDAE SAYSHQSTSR YSSVVNLQPS VTAKTDDHLS MPYYPVPSSN  240
DYDGKFQANP DMSFVSLMQG DRGENNLDAD LTYKSQKHLD LPSWDNCFET QAAGSQPASY  300
QPTHLSTQSY NASILPGRGN EMLRQVMADG FDKVQEFRGN SGWQLDAEYN VPSRFQGEVS  360
YAEIFNSFET TIAVDESKPL AQGNLELHFA NEDGWKSVKP NLEGNPTLDD KSVSMKPPFL  420
EGFMKEGLKK LDSFDRWMSK ELGDVKESQT QSTSGTYWEA VESENGVDDS IISPQVHLDS  480
YVLGPSLSQD QLFSIIDFSP NCAYAGSKIK VLITGRFLRS QQELQHCEWA CMFGEVEVRA  540
EVVADGVLRC HTPEHMPGRV HFYVTCSNRL ACSEVREFEF QVNENQDMDA PDMIGDNSNE  600
MLLHMRFVKL LSLGSGAAQN SFPRVNDPEL MNQLSSLIQE DNSEWDQMLK LTSEEEFSSE  660
KARNQLFQKL LKEKLYAWLL HKIAEGGKGP SVLDEGGQGV LHFAGALGYD WAIAPTVAAG  720
VSINFRDVNG WTALHWAANC GRERTVAFLI SQDAAAGALT DPTPRYPSGR TPADLASSNG  780
DKGIAGYCAE AALSTHFKLI GLKDPKEGDG GHISGSKVVQ TVSERTPTPV SHGDMTQGLS  840
LKDSLAAVCN ATQAAARIHQ VFRVQSFQKK QLKEHGGNEF GMSDERALSL LALKTARTGQ  900
HDESGHAAAV RIQNKFRSWK GRKDFLIMRQ RIVKIQAHVR GHQVRKNYRK IVWSVGILDK  960
VILRWRRKGS GLRGFKPEPI AEGSTTVAKP SKEDDDDFFK EGRKQTEQRL QKALARVKSM  1020
VQYPEARDQY RRLLNVVSDM QESKAVYDKA LENSEEAVDF DEDLIDLDAL LDDDDDALMT  1080
I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein