PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024962257.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 400aa MW: 45619.2 Da PI: 4.8393

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024962257.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.7	2.2e-34	53	144	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+++ed+++++++sws+ nsfvv+d+ +f++++Lp+yFkh nf+SF+RQLn+YgF+kv+ ++ weF+++ F g+++ll++ XP_024962257.1 53 FLTKTYDMVEDPSTDSVVSWSRGRNSFVVWDSYKFSTTLLPRYFKHGNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQRHLLKT 138 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+++ XP_024962257.1 139 IRRRRN 144 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MEFKTELQGG ASVKEEDVTF VSSTNTAATA GSSSSSSSPR PREGLHEVGP PPFLTKTYDM 60 VEDPSTDSVV SWSRGRNSFV VWDSYKFSTT LLPRYFKHGN FSSFIRQLNT YGFRKVDPDR 120 WEFANEGFLG GQRHLLKTIR RRRNIAQSTQ QKQEYGVCIE VGQYGMEEEL EALKRDRSLL 180 MAEIVRLRQL QQHSIDQLIA MENRLRTTER KQQNMMGFLA KAFSNPEFLQ RYMDKYAQKG 240 QDHIEIGRKR RLTMAPSVEN LQEVAGGMKN IQLNVDSFLL APTPVEDESS SDVGNQGDVS 300 SFVEDDSSGN LWEELLNVNL PIENEPEEFL DSLDGQNLDW DEDLQELVDQ MEYLSRGEWI 360 CKEAGLLFSC ILLLLGPKNH KNNFKKVSFL RTVSVAELVL

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MEFKTELQGG ASVKEEDVTF VSSTNTAATA GSSSSSSSPR PREGLHEVGP PPFLTKTYDM  60
VEDPSTDSVV SWSRGRNSFV VWDSYKFSTT LLPRYFKHGN FSSFIRQLNT YGFRKVDPDR  120
WEFANEGFLG GQRHLLKTIR RRRNIAQSTQ QKQEYGVCIE VGQYGMEEEL EALKRDRSLL  180
MAEIVRLRQL QQHSIDQLIA MENRLRTTER KQQNMMGFLA KAFSNPEFLQ RYMDKYAQKG  240
QDHIEIGRKR RLTMAPSVEN LQEVAGGMKN IQLNVDSFLL APTPVEDESS SDVGNQGDVS  300
SFVEDDSSGN LWEELLNVNL PIENEPEEFL DSLDGQNLDW DEDLQELVDQ MEYLSRGEWI  360
CKEAGLLFSC ILLLLGPKNH KNNFKKVSFL RTVSVAELVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-111	HSF family protein