PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024962119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | C2H2 | ||||||||
Protein Properties | Length: 507aa MW: 56657.8 Da PI: 8.7055 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6e-05 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H XP_024962119.1 58 YICEVCHKGFQRDQNLQLHRRGH 80 89*******************88 PP | |||||||
2 | zf-C2H2 | 13 | 0.0003 | 135 | 157 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + XP_024962119.1 135 WKCDKCSKRYAVQSDWKAHAKIC 157 58*****************9987 PP | |||||||
3 | zf-C2H2 | 10.8 | 0.0015 | 165 | 183 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + XP_024962119.1 165 DCGTIFSRKDSFVTHRAFC 183 8**************8765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence |
MSNFVQDFQD DDDEQFPTTT LMQASHGSPE NSIHPTNSDP EAEVVALSPR TLMATNRYIC 60 EVCHKGFQRD QNLQLHRRGH NLPWKLKQRP ANIQVKKRVY VCPEPNCVHH EPTRALGDLT 120 GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHAKICGTR EYRCDCGTIF SRKDSFVTHR 180 AFCDALTEEN YKMNLKVGAT GGVLQELSGS CTNTNIMSIS NHDKSLSLNS HMLNDHMDTM 240 FNQRTMRPCF SSSVVGANNS PMVAYTSATA LLQKAAEMGA KVSDNTITPI LLRGFTGYST 300 SSFNSSTISV RHVSSMDNCN NSGLHAVNPE LFDKNMEIGR NGRTGYGIST TTESGLYDSS 360 LLMHSSKENS GNLLERQVFM GGGERTTVDF LGVEPGGHSS LCGKRDYDVS LPYSHEHQSL 420 HQQQSDCHRT TVLLFNKARI PFASSDASSN LHYQNYPLFR RQLRRKLVFP ADLSAGKRAP 480 VIRFPSSFPA DALFFQRIPA VGNLSPT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-101 | C2H2 family protein |