PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024961887.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 26214.6 Da PI: 5.2216 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 81 | 127 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE++RRd++N++f+eL e+l + +s K +K iL+ A++ + +L XP_024961887.1 81 KACREKKRRDKLNERFQELNEILDPG---RSYKTDKTVILTDAIRMVVQL 127 678**********************9...9**************988776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MAAPAEDDGS NCFFDFSLIE QFPVPGGELP SLEPDFHWSS DPFPDSTEIS NGFVDSVGRS 60 NTTKEDESRK RPNPGSSSDS KACREKKRRD KLNERFQELN EILDPGRSYK TDKTVILTDA 120 IRMVVQLRNE ASQLKDSSQD MVVKINELKV EKNELRDEKQ KLKADKERLE QQLKACCAPP 180 TAFYPPAHPV MQMPPAVGGK FMPIMGFQGV PMWPFATPTA VDTSKDHVLR SPLA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 89 | RKRPNPGSSSDSKACREKKRR |
2 | 86 | 91 | KKRRDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-63 | bHLH family protein |