PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024961852.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 25310.6 Da PI: 5.8357 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.4 | 1.5e-09 | 70 | 118 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ rEr+RR+++N++f eL + l + + +K +iL A++ +++L XP_024961852.1 70 ENKACRERQRREKLNDRFLELSSTLEPG---RPASTDKWAILGDAIRVLNQL 118 56789**********************7...7788**************999 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence |
MDPFGDTNWD LIDYNSLIND VASTDLYWGD QSATVSLDTS LASFAPPEKE SAEKECTRKR 60 GRSISCNRAE NKACRERQRR EKLNDRFLEL SSTLEPGRPA STDKWAILGD AIRVLNQLKS 120 ESQDCKEMNE KLLEEIKTLK AEKNELREEK LVLKAEKAKM EQQVKAMTNL PPSGFMTPHP 180 AAYQAGASKM PIFPGYSYIP MWQYLPQSTR DTSHDHELRP PAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G14410.2 | 9e-63 | bHLH family protein |