PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024961808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 192aa MW: 21246.5 Da PI: 4.6427 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16 | 2.2e-05 | 142 | 181 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+++++ +r ++P ++ ++ ++iL +Av+Y+ksL+ XP_024961808.1 142 REKMRKMVKSIRGIVPDG---GGNEMNTVAILDEAVKYLKSLK 181 78899999999******9...9999***************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MQGDQAGSGY LPDPHISSFF VQSVDFRPSR DCPRNFIIFD RTDKRSQIMY NPTTASNFGY 60 FPDSTTLVQK DVNAPRVMNE DSADIDALLS FEDEEEEEEE VSTGRTGRSD TSDTCDSWCS 120 RSRNGGPGLL SGHGSKGSEE KREKMRKMVK SIRGIVPDGG GNEMNTVAIL DEAVKYLKSL 180 KVEAQKIGLG YL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.1 | 7e-12 | bHLH family protein |