PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961716.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 308aa MW: 34593.7 Da PI: 10.1848

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.2	2.8e-31	125	178	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++F++av+ LGG+e+AtPk++ elm+vk+Ltl+hvkSHLQ+YR+ XP_024961716.1 125 PRMRWTSTLHAHFIHAVQLLGGHERATPKSVQELMNVKDLTLAHVKSHLQMYRT 178 9****************************************************7 PP
2	Myb_DNA-binding	45.3	2e-14	126	177	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT ++ +++av++lGg+ t+k++ + m+ k +tl ++ks++q+y+ XP_024961716.1 126 RMRWTSTLHAHFIHAVQLLGGHeraTPKSVQELMNvKDLTLAHVKSHLQMYR 177 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MTSGAATCFP DLSLQISPPA ASVTGCITKR PRSSSSTGSD LSQENKFHHH QKSWAAADHI 60 CHQFDQPQLS LGLEIGALNH HRHLNINTVP SQPQHHRYHL PRIYGHDFRR RSRMVNFARR 120 STRAPRMRWT STLHAHFIHA VQLLGGHERA TPKSVQELMN VKDLTLAHVK SHLQMYRTVK 180 GTDKVAAAGL LADQMQVINS KTPLTFLEVR GDISVSPSTA LQSQSCRRSS TSSLETNDSY 240 YPMRENTSSH HCPSPIMNDS TKABEVEMVT LQYLSKKMKL RSNPSSLASE KLLNLEFTLG 300 SRQMDHTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	1e-45	G2-like family protein