PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961604.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NF-YB

Protein Properties

Length: 367aa MW: 41977 Da PI: 10.0511

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	164.9	1.1e-51	23	116	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 vreqdr++Pianv+rim+k+lP +akis++aket+qecvse+isfvtsea+++cqre+rkt++++d+lwa+++lGf+dy+epl++yl++yre++ XP_024961604.1 23 VREQDRLMPIANVIRIMRKILPPHAKISDEAKETIQECVSEYISFVTSEANHRCQREQRKTVTAEDILWAMSKLGFDDYIEPLTIYLHHYREFD 116 69******************************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MNVRPPSNSS SGSTTVNDNE CLVREQDRLM PIANVIRIMR KILPPHAKIS DEAKETIQEC 60 VSEYISFVTS EANHRCQREQ RKTVTAEDIL WAMSKLGFDD YIEPLTIYLH HYREFDFRAT 120 ITDHVKRPTH DPPPANSFHH AFATVFHHTG LFGTGHFFND QPKVLVPSRL PSAATVAGFE 180 PYARCKELTV KKVAPKGKVA KDPNKPKRLA GAFFVFLFFL NFITQICKLL CXFVAFLLNX 240 REEFRKQFKE ENPGNKSVAA VGKSGGAKWK SMSDVENAPV VAKAEKRKKE YEKTLASYNK 300 KLMNHMVEFY IRLGLYLAYF ESFIVITFST KKIGKMREYA KSTFYLLSTF GTSLFYVLQA 360 RTAFRSV

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MNVRPPSNSS SGSTTVNDNE CLVREQDRLM PIANVIRIMR KILPPHAKIS DEAKETIQEC  60
VSEYISFVTS EANHRCQREQ RKTVTAEDIL WAMSKLGFDD YIEPLTIYLH HYREFDFRAT  120
ITDHVKRPTH DPPPANSFHH AFATVFHHTG LFGTGHFFND QPKVLVPSRL PSAATVAGFE  180
PYARCKELTV KKVAPKGKVA KDPNKPKRLA GAFFVFLFFL NFITQICKLL CXFVAFLLNX  240
REEFRKQFKE ENPGNKSVAA VGKSGGAKWK SMSDVENAPV VAKAEKRKKE YEKTLASYNK  300
KLMNHMVEFY IRLGLYLAYF ESFIVITFST KKIGKMREYA KSTFYLLSTF GTSLFYVLQA  360
RTAFRSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	2e-60	NF-YB family protein