PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024961509.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 490aa    MW: 53996.6 Da    PI: 9.2198
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024961509.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.5e-17199296196
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k+lt sd+++ grlvlpk++ae++    +++ +  l+++d++g+ W+++l++  +++s++yvl+ G +  vk+ +L egD+v+F++ +  e++
  XP_024961509.1 199 FEKKLTASDAGRVGRLVLPKRCAEAYfpPVNEPFGEPLSIQDTEGKNWDLNLRFwpNNNSRMYVLE-GFSLVVKSVELVEGDVVTFSRLE-PEGK 291
                     99*************************9666667778***************9989999999***9.********************665.5665 PP

                     .EEEE CS
              B3  92 lvvkv 96 
                     l ++ 
  XP_024961509.1 292 LIMGY 296
                     65554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    
MTMTMTSHSS SPKLCANTKC KKILQVTRPS WKCPNGCFVR LCDECSLCDS CLNPQRSISP  60
PSWSRPAASF RKRSSEKTSV ISTSSIPVRG PAAVQTPCLL NSSNTEPQPQ PQVDISVRPT  120
QPSWLGERKN SSVKRSSQIR ASHVIKDKTA VGTEHSPSRH LLGSKSFTAQ SRHGNDHLLD  180
RYMPKQVTEC SDAKITPLFE KKLTASDAGR VGRLVLPKRC AEAYFPPVNE PFGEPLSIQD  240
TEGKNWDLNL RFWPNNNSRM YVLEGFSLVV KSVELVEGDV VTFSRLEPEG KLIMGYRKAK  300
STALSLKQAI VTVSPRNDVS KGNTSSAAVS QMKPDDPTSN IQSEVVRAKA AGRSKRKSSK  360
MGWGSDINEP EKEMVELDLT SKEAQELVRP PLGGRVPKSV VIDGVEIMGY EDVPVIGRPT  420
IIENLVNKMI QWAQCEGCYK WRKVPMDVVI PAGWTCSHNQ WDPHSCNSPT SLVGIATTIA  480
NFASVEQDFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.12e-67B3 family protein