PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961492.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 730aa MW: 83591.5 Da PI: 6.5125

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961492.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	103.4	2.2e-32	76	167	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r++tr+gCka++ vk +++gkw+v+++++eHnHel+p XP_024961492.1 76 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASMSVKIQDSGKWVVSTFVKEHNHELVP 167 9*************************************998888545677889*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MENEVIEFDM GLGGGGDDAV AIIDDEEMTD DSPSAANGIM GSSSFFDPST YVLQRDLDLE 60 PCEGMEFESE EAAKGFYNSY ARRVGFSTRV SSSRRSRKDG AIIQRSFVCA KEGFRNLNEK 120 RTKDREIKRP RTVTRVGCKA SMSVKIQDSG KWVVSTFVKE HNHELVPPDQ VHCLRSHRQI 180 SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR QRSLEGDIQL 240 LLDYLRQMHA DNPSFFYAVQ GDEEQCTGNV FWADTKARAN YTYFGDTVTF DTTYRSNRYR 300 LPFAPFTGIN HHGQPVLFGC AFLINESESS FIWLFKTWVS AMSGRLPVSI TTDHDTVIRS 360 AIMQVFPDIR HRFCKWHIFK KCQEKLSHVF LKYPNFEADF HKCVNLTDSV DEFETCWLSL 420 VDKYDLRDHE WLQAIYSSRI QWVPVYLRDT FFAEMSITQR SDSMNSYFDG YVNASTTLNQ 480 FVKLYEKALE SRNEKEVKAD YDTMNTLPLL RTPSPMEKQA SELYTRKIFM RFQEELVGTL 540 TLMASKVEDD GEVTTYQVAK FGEDNKSYRV NFNVLEMRAT CSCCMFEFSG LLCRHVLAVF 600 RVTNVLTLPS CYILKRWTIN AKSSVILEER VNDAFSSYLE SHTVRYNTLR HEALKFVEEG 660 AESVDTYNVA MSALEEAARR VAITAKNEGR VLMINGRTRE DARSNGTLTK RNISNHHESL 720 DQNLSELCVG

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MENEVIEFDM GLGGGGDDAV AIIDDEEMTD DSPSAANGIM GSSSFFDPST YVLQRDLDLE  60
PCEGMEFESE EAAKGFYNSY ARRVGFSTRV SSSRRSRKDG AIIQRSFVCA KEGFRNLNEK  120
RTKDREIKRP RTVTRVGCKA SMSVKIQDSG KWVVSTFVKE HNHELVPPDQ VHCLRSHRQI  180
SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR QRSLEGDIQL  240
LLDYLRQMHA DNPSFFYAVQ GDEEQCTGNV FWADTKARAN YTYFGDTVTF DTTYRSNRYR  300
LPFAPFTGIN HHGQPVLFGC AFLINESESS FIWLFKTWVS AMSGRLPVSI TTDHDTVIRS  360
AIMQVFPDIR HRFCKWHIFK KCQEKLSHVF LKYPNFEADF HKCVNLTDSV DEFETCWLSL  420
VDKYDLRDHE WLQAIYSSRI QWVPVYLRDT FFAEMSITQR SDSMNSYFDG YVNASTTLNQ  480
FVKLYEKALE SRNEKEVKAD YDTMNTLPLL RTPSPMEKQA SELYTRKIFM RFQEELVGTL  540
TLMASKVEDD GEVTTYQVAK FGEDNKSYRV NFNVLEMRAT CSCCMFEFSG LLCRHVLAVF  600
RVTNVLTLPS CYILKRWTIN AKSSVILEER VNDAFSSYLE SHTVRYNTLR HEALKFVEEG  660
AESVDTYNVA MSALEEAARR VAITAKNEGR VLMINGRTRE DARSNGTLTK RNISNHHESL  720
DQNLSELCVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein