PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961491.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 761aa MW: 87586.1 Da PI: 6.3796

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	103.3	2.3e-32	76	167	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r++tr+gCka++ vk +++gkw+v+++++eHnHel+p XP_024961491.1 76 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASMSVKIQDSGKWVVSTFVKEHNHELVP 167 9*************************************998888545677889*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence
MENEVIEFDM GLGGGGDDAV AIIDDEEMTD DSPSAANGIM GSSSFFDPST YVLQRDLDLE 60 PCEGMEFESE EAAKGFYNSY ARRVGFSTRV SSSRRSRKDG AIIQRSFVCA KEGFRNLNEK 120 RTKDREIKRP RTVTRVGCKA SMSVKIQDSG KWVVSTFVKE HNHELVPPDQ AAGMGPRRIM 180 SALIKEYGGI SKVGFTEVDC RNYMRNNRQR SLEGDIQLLL DYLRQMHADN PSFFYAVQGD 240 EEQCTGNVFW ADTKARANYT YFGDTVTFDT TYRSNRYRLP FAPFTGINHH GQPVLFGCAF 300 LINESESSFI WLFKTWVSAM SGRLPVSITT DHDTVIRSAI MQVFPDIRHR FCKWHIFKKC 360 QEKLSHVFLK YPNFEADFHK CVNLTDSVDE FETCWLSLVD KYDLRDHEWL QAIYSSRIQW 420 VPVYLRDTFF AEMSITQRSD SMNSYFDGYV NASTTLNQFV KLYEKALESR NEKEVKADYD 480 TMNTLPLLRT PSPMEKQASE LYTRKIFMRF QEELVGTLTL MASKVEDDGE VTTYQVAKFG 540 EDNKSYRVNF NVLEMRATCS CCMFEFSGLL CRHVLAVFRV TNVLTLPSCY ILKRWTINAK 600 SSVILEERVN DAFSSYLESH TVRYNTLRHE ALKFVEEGAE SVDTYNVAMS ALEEAARRVA 660 ITAKNEGRVL MINGRTREDA RSNGTLTKRN ISNHHESLDQ NLSEDEMDRK IQELNKEVEC 720 AKRKCEVYRS NLVSVLKDIE DHKQQLSLKV QIIRYSMKDC L

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence

MENEVIEFDM GLGGGGDDAV AIIDDEEMTD DSPSAANGIM GSSSFFDPST YVLQRDLDLE  60
PCEGMEFESE EAAKGFYNSY ARRVGFSTRV SSSRRSRKDG AIIQRSFVCA KEGFRNLNEK  120
RTKDREIKRP RTVTRVGCKA SMSVKIQDSG KWVVSTFVKE HNHELVPPDQ AAGMGPRRIM  180
SALIKEYGGI SKVGFTEVDC RNYMRNNRQR SLEGDIQLLL DYLRQMHADN PSFFYAVQGD  240
EEQCTGNVFW ADTKARANYT YFGDTVTFDT TYRSNRYRLP FAPFTGINHH GQPVLFGCAF  300
LINESESSFI WLFKTWVSAM SGRLPVSITT DHDTVIRSAI MQVFPDIRHR FCKWHIFKKC  360
QEKLSHVFLK YPNFEADFHK CVNLTDSVDE FETCWLSLVD KYDLRDHEWL QAIYSSRIQW  420
VPVYLRDTFF AEMSITQRSD SMNSYFDGYV NASTTLNQFV KLYEKALESR NEKEVKADYD  480
TMNTLPLLRT PSPMEKQASE LYTRKIFMRF QEELVGTLTL MASKVEDDGE VTTYQVAKFG  540
EDNKSYRVNF NVLEMRATCS CCMFEFSGLL CRHVLAVFRV TNVLTLPSCY ILKRWTINAK  600
SSVILEERVN DAFSSYLESH TVRYNTLRHE ALKFVEEGAE SVDTYNVAMS ALEEAARRVA  660
ITAKNEGRVL MINGRTREDA RSNGTLTKRN ISNHHESLDQ NLSEDEMDRK IQELNKEVEC  720
AKRKCEVYRS NLVSVLKDIE DHKQQLSLKV QIIRYSMKDC L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein