PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024961438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26962.8 Da PI: 9.9633 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.5 | 9.8e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eys+ XP_024961438.1 9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 99.1 | 6.6e-33 | 81 | 174 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ e+++++s++ e++kLk++ie L++++Rh++GedLe+Lsl+eLq++eqqLe++lk+iR+kKn++++e+i+el kkek+lqe+n++L+kkl+e XP_024961438.1 81 TAPETETQASWTLESSKLKAKIEVLEKNIRHYVGEDLEQLSLRELQNVEQQLETALKRIRTKKNQVMHESISELHKKEKALQERNNSLSKKLKE 174 455677889**********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYSTH 60 SSMETILERY ERYSYAEKLL TAPETETQAS WTLESSKLKA KIEVLEKNIR HYVGEDLEQL 120 SLRELQNVEQ QLETALKRIR TKKNQVMHES ISELHKKEKA LQERNNSLSK KLKENEKKST 180 SEQQDAMLPP HSFPSLANSS GPFIGAAMRE EESAQAHHVS SSMMPLWMIR HINQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-88 | MIKC_MADS family protein |