PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961432.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 362aa MW: 41417.2 Da PI: 10.0373

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961432.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.8	5.1e-17	17	108	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqlea 87 +Wt++e l+Liea+re++ +l r+ l+ p+W++v++k+ + +++ qC++k+e+l++r++++k++++ + ++ s++ yf+ +ea XP_024961432.1 17 CWTRDEALVLIEAYRERWYALHRAFLRTPDWDAVAEKVttscPDVIPPKTSAQCRHKMEKLRQRHRAEKQRASAFSgERFFSSWFYFEAMEA 108 8***********************************88777778899*******************99854778899****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MSVAAGQKPV RKFPPPCWTR DEALVLIEAY RERWYALHRA FLRTPDWDAV AEKVTTSCPD 60 VIPPKTSAQC RHKMEKLRQR HRAEKQRASA FSGERFFSSW FYFEAMEAME NGSNSEPGSN 120 HLIDSQIPSQ NLNSDRGIRF KPSAVQNLVT LATSSTRNSM KSKLNSGSRV SKRYPSYPNN 180 GSIHEEDECL VETPIEETSI PNKESKTHKD GWLIEAPVRE AKPPKNSPIQ DSSRPGLRPR 240 KFSKSVDEDE EMWIKVPKKT SLSSGKHENE KNGKDLKQGK KKKTKNDGIS EMVSSIKLLG 300 DGFMKMEKMK IDMAREIEKM RMETEMKRNE LMMESQKQIM DAFVNGLMES RKQKQPTTMA 360 DL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MSVAAGQKPV RKFPPPCWTR DEALVLIEAY RERWYALHRA FLRTPDWDAV AEKVTTSCPD  60
VIPPKTSAQC RHKMEKLRQR HRAEKQRASA FSGERFFSSW FYFEAMEAME NGSNSEPGSN  120
HLIDSQIPSQ NLNSDRGIRF KPSAVQNLVT LATSSTRNSM KSKLNSGSRV SKRYPSYPNN  180
GSIHEEDECL VETPIEETSI PNKESKTHKD GWLIEAPVRE AKPPKNSPIQ DSSRPGLRPR  240
KFSKSVDEDE EMWIKVPKKT SLSSGKHENE KNGKDLKQGK KKKTKNDGIS EMVSSIKLLG  300
DGFMKMEKMK IDMAREIEKM RMETEMKRNE LMMESQKQIM DAFVNGLMES RKQKQPTTMA  360
DL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	280	310	KKKKTKNDGISEMVSSIKLLGDGFMKMEKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-38	Trihelix family protein