PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024961421.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GATA

Protein Properties

Length: 549aa MW: 60865.2 Da PI: 7.5633

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024961421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50	4.1e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp d+++ LCnaCG ++r kg+ XP_024961421.1 7 CYHCGVTSTPLWRNGPpDKPI-LCNACGSRWRTKGS 41 **************77777.*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPDKPILCN ACGSRWRTKG SLVNYTPLHA RSEPDDFEDH 60 RVSRVKTISI KNKEAKLLKR KQNYDNVVGG SGSIMLGGGG FGGGLAHDHH NQGFRKGFDE 120 DTSNRSSSGS AISNSDGYMQ LGSADASDLT GPAQSSVVWD TLVPSRKRTC VNRLKQSPVE 180 KLTKDLHTIL HEQQSYFSGS SEEDLIFESD TPMVSVEIGH GSVLMRHPNS MAREEESEAS 240 SLSVDTKNEA YSRLTTLPVY NANKGGNFSS RRIDTSKKPM NQDHMNRDND EKLQILMNHN 300 SPLCHIDLKD VINFEEFASH MTKDEQQQLL KYLPLVDNAQ LYNSLKSMFD SPQFMENLSS 360 FQKLLAEGVF DLSFPVVKNE GCRTLKKLAL CNVTKSDWVE KYNLLQDTKC KYDGGGSVVG 420 GVRNAMTPGH SVKLKRSRDA QFQAYTGPKT AMKSPKRTSM KTNYEHKEVT DNDGPGFSPR 480 SLFALPPDNS SLMLDSLRYA DESCDQDLLL DVPSNNSFPQ AELLRPTLSF PAAQASTCSS 540 SIYQNFVGR

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPDKPILCN ACGSRWRTKG SLVNYTPLHA RSEPDDFEDH  60
RVSRVKTISI KNKEAKLLKR KQNYDNVVGG SGSIMLGGGG FGGGLAHDHH NQGFRKGFDE  120
DTSNRSSSGS AISNSDGYMQ LGSADASDLT GPAQSSVVWD TLVPSRKRTC VNRLKQSPVE  180
KLTKDLHTIL HEQQSYFSGS SEEDLIFESD TPMVSVEIGH GSVLMRHPNS MAREEESEAS  240
SLSVDTKNEA YSRLTTLPVY NANKGGNFSS RRIDTSKKPM NQDHMNRDND EKLQILMNHN  300
SPLCHIDLKD VINFEEFASH MTKDEQQQLL KYLPLVDNAQ LYNSLKSMFD SPQFMENLSS  360
FQKLLAEGVF DLSFPVVKNE GCRTLKKLAL CNVTKSDWVE KYNLLQDTKC KYDGGGSVVG  420
GVRNAMTPGH SVKLKRSRDA QFQAYTGPKT AMKSPKRTSM KTNYEHKEVT DNDGPGFSPR  480
SLFALPPDNS SLMLDSLRYA DESCDQDLLL DVPSNNSFPQ AELLRPTLSF PAAQASTCSS  540
SIYQNFVGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-133	GATA family protein