PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024961349.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 235aa MW: 26850.2 Da PI: 5.7891 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.4e-20 | 66 | 119 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle+Le+ F+++ +++ +++ +LA++lgL+ rq+ vWFqNrRa++k XP_024961349.1 66 KKKRLTSEQLEALENSFQEEIKLDPDRKMKLAQELGLQPRQIAVWFQNRRARWK 119 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119 | 2.6e-38 | 66 | 157 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+rl++eq+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++da+ +e+++L++ev +Lr+ lke XP_024961349.1 66 KKKRLTSEQLEALENSFQEEIKLDPDRKMKLAQELGLQPRQIAVWFQNRRARWKAKQLERLYDALKQEFDAVFREKQKLQDEVLALRTILKE 157 9*************************************************************************************988775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MDWSSSNPMP FVPRPAQSSF AFLYNYNSDP YLYPPGGTEM KQMMQQGSLP MMDMSQLDYD 60 NNNQDKKKRL TSEQLEALEN SFQEEIKLDP DRKMKLAQEL GLQPRQIAVW FQNRRARWKA 120 KQLERLYDAL KQEFDAVFRE KQKLQDEVLA LRTILKEQGK RQAAVSTTGY TDMSGEETVE 180 STSVAAIRSS NNHPHHTVVA ANTAAAVECS YMLNYDGSAM PTPSYSNWAV LPSYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 95 | KKKRLTSEQLEALENSFQEEIKLDPDRKMK |
2 | 114 | 122 | RRARWKAKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 6e-59 | HD-ZIP family protein |